PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Han004309
Organism
Helianthus annuus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Heliantheae alliance; Heliantheae; Helianthus
Family C2H2
Protein Properties Length: 369aa    MW: 41549.3 Da    PI: 9.3389
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-169a-Helianthus_annuus-49015PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.52.4e-0589111123
                EEETTTTEEESSHHHHHHHHHHT CS
    zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                + C++C+k F r  nL+ H r H
  Han004309  89 FMCEICNKGFQRDQNLQLHRRGH 111
                89*******************88 PP
2zf-C2H2130.0003166188123
                EEETTTTEEESSHHHHHHHHHHT CS
    zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                +kC++C+k++  +s+ k H + +
  Han004309 166 WKCEKCSKRYAVQSDWKAHSKIC 188
                58*****************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.36E-788111No hitNo description
Gene3DG3DSA:3.30.160.601.5E-588111IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.03189111IPR015880Zinc finger, C2H2-like
PfamPF121714.4E-589111IPR022755Zinc finger, double-stranded RNA binding
PROSITE profilePS5015710.9989111IPR007087Zinc finger, C2H2
PROSITE patternPS00028091111IPR007087Zinc finger, C2H2
SMARTSM0035593131161IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.604.8E-5154187IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.36E-7161186No hitNo description
SMARTSM00355130166186IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 369 aa     Download sequence    Send to blast
MKGIFVDDNM SNLTSASNEA SLSSSSNRNE IGTMYPPPQI QQSFGSVPIS TNTQTQSSNK  60
KKRNLPGNPD PEAEVIALSP KSLMATNRFM CEICNKGFQR DQNLQLHRRG HNLPWKLKQK  120
SKLEVVRKKV YVCPEPSCVH HEPSRALGDL TGIKKHFSRK HGEKKWKCEK CSKRYAVQSD  180
WKAHSKICGT REYRCDCGTL FSRRDSFITH RAFCDDLAEE SVRSSSSALN HLPLPLQFDF  240
PPKTEPQHLL QHPQLSFNIG SSTTPHHNHQ LPSWLDQHHQ QQQPKNPNPN NNNNNLHLPS  300
PSSHMSATAL LQKAAQMGAT ISNPTPTHDL NSTASIILNG SHQTLQHDHT CAPLVSPHHQ  360
QHHHPSDYX
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C2e-34162231372Zinc finger protein JACKDAW
5b3h_F2e-34162231372Zinc finger protein JACKDAW
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1117128KQKSKLEVVRKK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000305}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022001746.10.0protein indeterminate-domain 7-like
SwissprotQ8H1F51e-121IDD7_ARATH; Protein indeterminate-domain 7
TrEMBLA0A251SVD10.0A0A251SVD1_HELAN; Putative zinc finger, C2H2-like protein
STRINGMigut.A00127.1.p1e-132(Erythranthe guttata)
STRINGXP_010242234.11e-132(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G55110.11e-113indeterminate(ID)-domain 7
Publications ? help Back to Top
  1. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]