PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Han005422
Organism
Helianthus annuus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Heliantheae alliance; Heliantheae; Helianthus
Family ZF-HD
Protein Properties Length: 272aa    MW: 29789.3 Da    PI: 10.0989
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-169a-Helianthus_annuus-40782PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer105.33.7e-3346101458
  ZF-HD_dimer   4 vrYkeClkNhAaslGghavDGCgEfmpsegee.gtaaalkCaACgCHRnFHRreve 58 
                    YkeClkNhA+++Ggha+DGCgEfmps++ + ++++++kCaACgCHRnFHRre++
    Han005422  46 PAYKECLKNHAVAIGGHALDGCGEFMPSPTYSpTQPSSFKCAACGCHRNFHRREPT 101
                  58*****************************99********************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047701.3E-2747100IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015661.8E-304899IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152326.4524899IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257743.0E-1648102IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466891.03E-18158230IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.0E-28161231IPR009057Homeodomain-like
TIGRFAMsTIGR015653.0E-25171227IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 272 aa     Download sequence    Send to blast
MDQKHPTTKI PHHESETPPH SQSTNLITFP NGKTHRHHPP PHTAAPAYKE CLKNHAVAIG  60
GHALDGCGEF MPSPTYSPTQ PSSFKCAACG CHRNFHRREP TQFIDYPRPH QTSTPTSKSP  120
GSPANAEPTN YAFGQHLLLS LGTGPRTATA DQNHTVATPG TPSGVKVSGN KRFRTKFSPE  180
QKQKMLNFAE KVGWKMQRCD DKMVTDFCNE IGIRRRIFKV WMHNNKNTSA KREKDTTINA  240
TATTTVVAGG VAASVVRSNE SSHQENGSSS SS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A2e-221712281875ZF-HD homeobox family protein
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, inflorescences, open flowers and seeds. Detected in stems and seedlings. {ECO:0000269|PubMed:16428600}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in the up-regulation of several stress-inducible genes. Acts as a transcriptional activator by interacting with MED25 and NAC proteins. Involved in increased drought tolerance. {ECO:0000269|PubMed:16428600, ECO:0000269|PubMed:17233795}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by abscisic acid and by drought and salt stress. Not induced by cold. {ECO:0000269|PubMed:17233795}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021970923.10.0zinc-finger homeodomain protein 11-like
SwissprotQ9SEZ19e-60ZHD11_ARATH; Zinc-finger homeodomain protein 11
TrEMBLA0A251UJJ80.0A0A251UJJ8_HELAN; Putative ZF-HD homeobox protein, Cys/His-rich dimerization domain-containing protein
STRINGGLYMA13G05420.12e-64(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69600.14e-52zinc finger homeodomain 1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]