PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Han005802

Organism

Helianthus annuus

Taxonomic ID

4232

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Heliantheae alliance; Heliantheae; Helianthus

Family

MYB_related

Protein Properties

Length: 260aa MW: 30023.7 Da PI: 10.1557

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Han#S48323849	PU_ref	Unigene	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	35.2	2.8e-11	32	75	2	48
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 WT eEde+l+++ k++++ W+tIa +g Rt+ qc +r+ k+l Han005802 32 TEWTREEDEKLLHLAKLMPTQ-WRTIAPIVG--RTPSQCLERYEKLL 75 68***************99.****8..********9986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	1.36E-14	22	79	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	1.9E-14	24	76	IPR009057	Homeodomain-like
PROSITE profile	PS51294	21.053	26	79	IPR017930	Myb domain
CDD	cd11659	2.47E-31	27	78	No hit	No description
SMART	SM00717	1.7E-12	30	77	IPR001005	SANT/Myb domain
Pfam	PF13921	7.5E-10	34	82	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 260 aa Download sequence Send to blast
SWGRISSLLV RNPLNSVKLV GXEWLDPSIK KTEWTREEDE KLLHLAKLMP TQWRTIAPIV 60 GRTPSQCLER YEKLLDAACA KDENYEPGDD PRKLRPGEID PNPESKPARP DPVDMDEDEK 120 EMLSEARARL ANTRGKKAKR KAREKQLEEA RRLASLQKRR XIKAAGIDNR HRKRKRKGID 180 YNAEIPFEKR PPPGFYDVTD ESSVVEQPKF PTTIEELEGE RRADKEARLR KQDIARNKIA 240 QRQDAPTAIL PAKQMNDPRT

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5mqf_L	2e-96	2	250	31	280	Cell division cycle 5-like protein
5xjc_L	2e-96	2	250	31	280	Cell division cycle 5-like protein
5yzg_L	2e-96	2	250	31	280	Cell division cycle 5-like protein
5z56_L	2e-96	2	250	31	280	Cell division cycle 5-like protein
5z57_L	2e-96	2	250	31	280	Cell division cycle 5-like protein
5z58_L	2e-96	2	250	31	280	Cell division cycle 5-like protein
6ff4_L	2e-96	2	250	31	280	Cell division cycle 5-like protein
6ff7_L	2e-96	2	250	31	280	Cell division cycle 5-like protein
6icz_L	2e-96	2	250	31	280	Cell division cycle 5-like protein
6id0_L	2e-96	2	250	31	280	Cell division cycle 5-like protein
6id1_L	2e-96	2	250	31	280	Cell division cycle 5-like protein
6qdv_O	2e-96	2	250	31	280	Cell division cycle 5-like protein
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	157	176	KRRXIKAAGIDNRHRKRKRK
2	171	176	RKRKRK

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed extensively in shoot and root meristems. {ECO:0000269\|PubMed:8917598}.

Functional Description ? help Back to Top
Source	Description
UniProt	Component of the MAC complex that probably regulates defense responses through transcriptional control and thereby is essential for plant innate immunity. Possesses a sequence specific DNA sequence 'CTCAGCG' binding activity. Involved in mRNA splicing and cell cycle control. May also play a role in the response to DNA damage. {ECO:0000250\|UniProtKB:Q99459, ECO:0000269\|PubMed:17298883, ECO:0000269\|PubMed:17575050, ECO:0000269\|PubMed:8917598}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021977549.1	1e-158	cell division cycle 5-like protein
Swissprot	P92948	1e-143	CDC5L_ARATH; Cell division cycle 5-like protein
TrEMBL	A0A251U5N8	1e-157	A0A251U5N8_HELAN; Putative cell division cycle 5
STRING	XP_010039513.1	1e-149	(Eucalyptus grandis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G09770.1	1e-137	cell division cycle 5

Publications ? help Back to Top
Heyndrickx KS,Vandepoele K Systematic identification of functional plant modules through the integration of complementary data sources. Plant Physiol., 2012. 159(3): p. 884-901 [PMID:22589469] Li S, et al. MAC3A and MAC3B, Two Core Subunits of the MOS4-Associated Complex, Positively Influence miRNA Biogenesis. Plant Cell, 2018. 30(2): p. 481-494 [PMID:29437988]