PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Han005842
Organism
Helianthus annuus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Heliantheae alliance; Heliantheae; Helianthus
Family B3
Protein Properties Length: 259aa    MW: 29376.6 Da    PI: 8.1608
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-169a-Helianthus_annuus-45579PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B360.33.4e-19147248199
                EEEE-..-HHHHT.T-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTE..EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
         B3   1 ffkvltpsdvlks.grlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgr..yvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                f+k lt sd+  + gr+v+pkk+ae++  +++++++ ++ + d ++++W++ ++y+ + g+  yvl+ G +eF   ++L++gD+v+F++++  ++++ ++
  Han005842 147 FEKLLTASDADIRtGRIVIPKKYAETFfpEISEPKGLMMNILDIENKEWKFAFRYWPNCGSrtYVLE-GIREFLAVKKLQAGDTVTFYRVE-PGGNMAIG 244
                89999999987555***********99**99999999******************888888868888.********************776.99999999 PP

                EE-S CS
         B3  96 vfrk 99 
                ++++
  Han005842 245 IRKT 248
                9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.106.3E-26144248IPR015300DNA-binding pseudobarrel domain
CDDcd100171.04E-21145247No hitNo description
SuperFamilySSF1019364.97E-21145242IPR015300DNA-binding pseudobarrel domain
PfamPF023622.5E-16147247IPR003340B3 DNA binding domain
SMARTSM010192.5E-18147249IPR003340B3 DNA binding domain
PROSITE profilePS5086310.941148249IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 259 aa     Download sequence    Send to blast
MASSSSSSKT SCFQCHDSTV NCFRNGWGLR NGERAHLCYR CACVYEDGRF CETFHSNDDG  60
WRDCESCGKL VHCGCVVSFN QYFLLDFGGV ICMECSKKNL ILARNRRYAR EFQTDPVDFP  120
DLAKKVQSDS DIQCIPRTNK SVLSPLFEKL LTASDADIRT GRIVIPKKYA ETFFPEISEP  180
KGLMMNILDI ENKEWKFAFR YWPNCGSRTY VLEGIREFLA VKKLQAGDTV TFYRVEPGGN  240
MAIGIRKTSA VKLPHQAST
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9a_A2e-351282495125B3 domain-containing transcription repressor VAL1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022039213.10.0B3 domain-containing transcription factor VAL3-like isoform X1
SwissprotQ6Z3U31e-35Y7797_ORYSJ; B3 domain-containing protein Os07g0679700
TrEMBLA0A251UT950.0A0A251UT95_HELAN; Putative DNA-binding pseudobarrel domain-containing protein
STRINGMigut.H01903.1.p2e-92(Erythranthe guttata)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32010.15e-35HSI2-like 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]