PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Han005958
Organism
Helianthus annuus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Heliantheae alliance; Heliantheae; Helianthus
Family NAC
Protein Properties Length: 255aa    MW: 28269.4 Da    PI: 8.9844
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-169a-Helianthus_annuus-6564PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM644.7e-20146378128
        NAM  78 tksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                + sgyWkatg+dk +++ +g+ vg+kk Lvfy g+apkg+kt+W+mheyrl
  Han005958  14 AGSGYWKATGTDKVITT-EGRRVGIKKALVFYVGKAPKGNKTNWIMHEYRL 63 
                579************99.9999***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100529.283186IPR003441NAC domain
SuperFamilySSF1019419.15E-29887IPR003441NAC domain
PfamPF023651.5E-91563IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 255 aa     Download sequence    Send to blast
XIVLDPGFGL MAVAGSGYWK ATGTDKVITT EGRRVGIKKA LVFYVGKAPK GNKTNWIMHE  60
YRLSDPQRKT GSSRLDEWVL CRIYKKNSSA QKTISGGQTT EQSHGSPSSS SSQFDDVLES  120
LPEIQDRCFN LPRVNSIKTF QQEDQKLNLQ KFDSGNYDWA SIASFGLPEP VVQDPLPQPT  180
MNGGSSMAPI YTMDTKFGRS VEDEVQSGIR SQRVDHPGYF QSNLSPFGHS QSVSNTIDPF  240
GIRYPTQQGV LGFRQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A3e-43139292171NO APICAL MERISTEM PROTEIN
1ut4_B3e-43139292171NO APICAL MERISTEM PROTEIN
1ut7_A3e-43139292171NO APICAL MERISTEM PROTEIN
1ut7_B3e-43139292171NO APICAL MERISTEM PROTEIN
3swm_A3e-43139295174NAC domain-containing protein 19
3swm_B3e-43139295174NAC domain-containing protein 19
3swm_C3e-43139295174NAC domain-containing protein 19
3swm_D3e-43139295174NAC domain-containing protein 19
3swp_A3e-43139295174NAC domain-containing protein 19
3swp_B3e-43139295174NAC domain-containing protein 19
3swp_C3e-43139295174NAC domain-containing protein 19
3swp_D3e-43139295174NAC domain-containing protein 19
4dul_A3e-43139292171NAC domain-containing protein 19
4dul_B3e-43139292171NAC domain-containing protein 19
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in guard cells of the epidermis. {ECO:0000269|PubMed:25005917}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that acts downstream of MYC2 in the jasmonate-mediated response to Botrytis cinerea infection (PubMed:28733419). With MYC2 forms a transcription module that regulates wounding-responsive genes (PubMed:28733419). Involved in jasmonate- and coronatine-mediated stomatal reopening in response to Pseudomonas syringae pv tomato DC3000 infection (PubMed:25005917). Regulates the expression of threonine deaminase 2 (TD2) through promoter binding (PubMed:28733419). {ECO:0000269|PubMed:25005917, ECO:0000269|PubMed:28733419}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by jasmonate (JA) (PubMed:25005917, PubMed:28733419, PubMed:30610166). Induced by wounding (PubMed:28733419, PubMed:25005917). Induced by infection with the fungal pathogen Botrytis cinerea (PubMed:28733419). Induced by coronatine (PubMed:25005917). {ECO:0000269|PubMed:25005917, ECO:0000269|PubMed:28733419, ECO:0000269|PubMed:30610166}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021992825.11e-179NAC domain-containing protein 72-like
SwissprotA0A3Q7HH642e-86JA2L_SOLLC; NAC domain-containing protein JA2L
TrEMBLA0A251T7X71e-178A0A251T7X7_HELAN; Putative NAC (No Apical Meristem) domain transcriptional regulator superfamily protein
STRINGMigut.M00863.1.p4e-93(Erythranthe guttata)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27410.28e-59NAC family protein
Publications ? help Back to Top
  1. Tomato Genome Consortium
    The tomato genome sequence provides insights into fleshy fruit evolution.
    Nature, 2012. 485(7400): p. 635-41
    [PMID:22660326]
  2. Du M, et al.
    MYC2 Orchestrates a Hierarchical Transcriptional Cascade That Regulates Jasmonate-Mediated Plant Immunity in Tomato.
    Plant Cell, 2017. 29(8): p. 1883-1906
    [PMID:28733419]
  3. Liu Y, et al.
    MYC2 Regulates the Termination of Jasmonate Signaling via an Autoregulatory Negative Feedback Loop.
    Plant Cell, 2019. 31(1): p. 106-127
    [PMID:30610166]