PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Han006024
Organism
Helianthus annuus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Heliantheae alliance; Heliantheae; Helianthus
Family GRAS
Protein Properties Length: 252aa    MW: 28874.3 Da    PI: 6.3078
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Han#S18744583PU_refUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS117.61.6e-36624720277
       GRAS  20 aqalLarlselaspdgdpmqRlaa.yfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqaIleavege.ervHiiDf 117
                a+ +++ ++e  +p g+++ R+a+  f e  ++ +++                +++ +   a+++f++++P+ +f+++taN++Ileav  + e vHi+Df
  Han006024   6 AKVIVKCIREKINPVGQTLDRIAFkLFGENQEEYINQ----------------ESMRNFKIAFRVFYDIFPYGRFAYFTANSTILEAVPAHvESVHIVDF 89 
                4555555555555555555555441233333333333................336677788999***********************9999******** PP

       GRAS 118 disqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkp..gEalaVnlvlqlhrlld 215
                d ++G QWp  +qa+a+    + sl iT ++  ++++  + ++t++ L +fA+++g++++ + +   ++ +l ++ ++ ++  +E ++ n+++ l ++  
  Han006024  90 DPGEGSQWPQVIQAIAQM---KKSLIITSIKL-DQDQDSQFHQTRWHLCNFARTFGLNLKVQEI---EIGQL-VNLIEGRKsgKEFVVFNCMVGLPHMG- 180
                ****************95...567*******9.668999***********************98...44444.3445544455***************8. PP

       GRAS 216 esvsleserdevLklvkslsPk...vvvvveqe.adh..nsesFlerflealeyysalfdsleaklpr 277
                ++ ++++  +++L++ k++ ++   ++++ + e  ++  n++++   f + l +y al++s+e ++p+
  Han006024 181 KTRKTNQ-VTDFLNVAKHVLAQnqgIITFGDGEeGERmgNHSDYPSFFDNNLAHYKALYESIECGFPS 247
                4444444.79********9554444****9876444457999*********************99885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098522.7261252IPR005202Transcription factor GRAS
PfamPF035145.5E-346247IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 252 aa     Download sequence    Send to blast
XQTELAKVIV KCIREKINPV GQTLDRIAFK LFGENQEEYI NQESMRNFKI AFRVFYDIFP  60
YGRFAYFTAN STILEAVPAH VESVHIVDFD PGEGSQWPQV IQAIAQMKKS LIITSIKLDQ  120
DQDSQFHQTR WHLCNFARTF GLNLKVQEIE IGQLVNLIEG RKSGKEFVVF NCMVGLPHMG  180
KTRKTNQVTD FLNVAKHVLA QNQGIITFGD GEEGERMGNH SDYPSFFDNN LAHYKALYES  240
IECGFPSYLN EX
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021985098.10.0nodulation-signaling pathway 2 protein-like
TrEMBLA0A251TGY60.0A0A251TGY6_HELAN; Putative transcription factor GRAS
STRINGEOY071076e-80(Theobroma cacao)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66770.16e-16GRAS family protein