PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Han006034
Organism
Helianthus annuus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Heliantheae alliance; Heliantheae; Helianthus
Family MYB
Protein Properties Length: 252aa    MW: 28961.6 Da    PI: 9.8481
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Han#S48333095PU_refUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.83.8e-161766148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT..TTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg..kgRtlkqcksrwqkyl 48
                     r+rW +eEd ll d+v+q+G++ W++I+++m   + R +k+c +rw +yl
        Han006034 17 RQRWQPEEDALLRDYVNQYGPREWNLISQRMSktLDRDPKSCLERWKNYL 66
                     89**********************************************97 PP
2Myb_DNA-binding33.88.1e-1172116147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +g+ T++E+ l + + +++G++ Wk+Ia++++ gRt+k +  +w  +
        Han006034  72 KGSLTPQEQALVISLQAKYGNK-WKKIAAEVP-GRTAKRLGKWWEVF 116
                      6788******************.*********.*****999999766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.6281266IPR017930Myb domain
SMARTSM007178.4E-131668IPR001005SANT/Myb domain
SuperFamilySSF466891.32E-2217111IPR009057Homeodomain-like
CDDcd001672.59E-101966No hitNo description
Gene3DG3DSA:1.10.10.601.9E-211973IPR009057Homeodomain-like
PfamPF139212.3E-142081No hitNo description
PROSITE profilePS5129422.03467121IPR017930Myb domain
SMARTSM007172.2E-971119IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.0E-1574120IPR009057Homeodomain-like
CDDcd001673.49E-776117No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 252 aa     Download sequence    Send to blast
XVYLYLHRSY DSEMKERQRW QPEEDALLRD YVNQYGPREW NLISQRMSKT LDRDPKSCLE  60
RWKNYLKPGI KKGSLTPQEQ ALVISLQAKY GNKWKKIAAE VPGRTAKRLG KWWEVFKEKQ  120
IKQQIHNSKI TGSSTSNPLP PPPSVAVVSG CCSSPEKAIQ GTYDHILETF AEKYVQPYLK  180
PTMPNLNSPI LSLGSTSRAE PEPSLTPVVQ LPPWMNQNQN QNQKHINVVY DVIFFFKSTT  240
PSLLQSDISH PX
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3zqc_A1e-14241309112MYB3
3zqc_D1e-14241309112MYB3
3zqc_G1e-14241309112MYB3
3zqc_J1e-14241309112MYB3
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Han.13140.0bud
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in lateral organ promordia. {ECO:0000269|PubMed:10102816, ECO:0000269|PubMed:16243907}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor required for normal cell differentiation. Interacts directly with asymmetric leaves 2 (AS2) to repress the knox homeobox genes. {ECO:0000269|PubMed:10102816, ECO:0000269|PubMed:12750468, ECO:0000269|PubMed:9655808}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021982905.11e-147protein rough sheath 2 homolog
SwissprotQ9S7B21e-62RS2_MAIZE; Protein rough sheath 2
TrEMBLA0A251TY511e-153A0A251TY51_HELAN; Putative myb-like HTH transcriptional regulator family protein
STRINGXP_006482295.15e-86(Citrus sinensis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37630.11e-62MYB family protein