PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Han006063
Organism
Helianthus annuus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Heliantheae alliance; Heliantheae; Helianthus
Family bHLH
Protein Properties Length: 251aa    MW: 27817.9 Da    PI: 5.6811
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Han#S48341800PU_refUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH34.82.9e-11197242655
                HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
        HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                +++Er RR ri +++ +L el+P      +   + a++L +AveY+k Lq
  Han006063 197 SIAERVRRTRISDRIRKLXELVPXM----DXQTNTADMLDEAVEYVKFLQ 242
                689*********************7....699*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088813.738191241IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474597.59E-15194250IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.07E-11195246No hitNo description
Gene3DG3DSA:4.10.280.101.4E-14196250IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.7E-8197242IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.7E-11197247IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 251 aa     Download sequence    Send to blast
XGILPKESCL KQTQPNRDRT KCNRHTVALA AAPVPDSPGS GXAPATWLEA LLESEEEDVI  60
IDPPKPTLTP PIVPHVHQHT SIATTTTTAD TKPTFVDPNL LIPNPIGLRQ NSSPAEFLSQ  120
INNPDAFLPN YSTASFDDYL SSSRDIGGGL DNQRAKFTTQ LSGDQSMLLD ADMDKILGDS  180
VPCRVRVKRG CATHPRSIAE RVRRTRISDR IRKLXELVPX MDXQTNTADM LDEAVEYVKF  240
LQRQIQELRE X
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269|PubMed:12679534}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021982821.11e-148transcription factor bHLH80-like
SwissprotQ9C8P84e-51BH080_ARATH; Transcription factor bHLH80
TrEMBLA0A251TXW61e-147A0A251TXW6_HELAN; Putative basic helix-loop-helix (BHLH) DNA-binding superfamily protein
STRINGSolyc06g065040.2.16e-64(Solanum lycopersicum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G35460.12e-42bHLH family protein