PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Han006117
Organism
Helianthus annuus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Heliantheae alliance; Heliantheae; Helianthus
Family NAC
Protein Properties Length: 249aa    MW: 26724 Da    PI: 6.2797
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Han#S32079607PU_refUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM286.3e-091992484088
        NAM  40 ykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgk 88 
                 +++P  +  +++   e+e + Fs+++ ky++g+++nrat sgyWkatg 
  Han006117 199 RDLDPVVFLeNELLDCEQERFLFSTKEVKYPNGNQSNRATLSGYWKATGL 248
                45555544324444567899****************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.40.50.9707.8E-8638213IPR029061Thiamin diphosphate-binding fold
SuperFamilySSF525181.65E-6138212IPR029061Thiamin diphosphate-binding fold
PfamPF027794.9E-4439210IPR005475Transketolase-like, pyrimidine-binding domain
SMARTSM008614.2E-5440214IPR005475Transketolase-like, pyrimidine-binding domain
CDDcd070363.14E-10144210No hitNo description
PROSITE profilePS5100511.818169249IPR003441NAC domain
SuperFamilySSF1019413.01E-8198247IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 249 aa     Download sequence    Send to blast
MLGIVRRNVG GAGGLSSQGF GRLRPVASAI RNYSSGGKEM TVRDALNSAL DEEMAADPNV  60
FVMGEEVGEY QGAYKITKGL LDKYGPERVL DTPITEAXVA GIGVGSAYHG LKPVKEFMTF  120
NFSMQAIDHV INSAAKSNYM SAGQINVPIV FRGPNGPAAG VGAQHSQCYG AWYGSVPGLK  180
VLVPYSSEDA RGLLKAAIRD LDPVVFLENE LLDCEQERFL FSTKEVKYPN GNQSNRATLS  240
GYWKATGLD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ni4_B4e-803621211187Pyruvate dehydrogenase E1 component: Beta subunit
1ni4_D4e-803621211187Pyruvate dehydrogenase E1 component: Beta subunit
2ozl_B4e-803621211187Pyruvate dehydrogenase E1 component subunit beta
2ozl_D4e-803621211187Pyruvate dehydrogenase E1 component subunit beta
6cer_B3e-80362121177Pyruvate dehydrogenase E1 component subunit beta, mitochondrial
6cer_D3e-80362121177Pyruvate dehydrogenase E1 component subunit beta, mitochondrial
6cer_F3e-80362121177Pyruvate dehydrogenase E1 component subunit beta, mitochondrial
6cer_H3e-80362121177Pyruvate dehydrogenase E1 component subunit beta, mitochondrial
6cfo_B4e-803621211187Pyruvate dehydrogenase E1 component subunit beta, mitochondrial
6cfo_D4e-803621211187Pyruvate dehydrogenase E1 component subunit beta, mitochondrial
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Han.34600.0embryo
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, immature rosettes, and mature rosettes. {ECO:0000269|PubMed:8061040}.
Functional Description ? help Back to Top
Source Description
UniProtThe pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2). It contains multiple copies of three enzymatic components: pyruvate dehydrogenase (E1), dihydrolipoamide acetyltransferase (E2) and lipoamide dehydrogenase (E3).
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021976252.11e-147pyruvate dehydrogenase E1 component subunit beta-1, mitochondrial isoform X1
RefseqXP_021976253.11e-147pyruvate dehydrogenase E1 component subunit beta-1, mitochondrial isoform X1
SwissprotQ387991e-118ODPB1_ARATH; Pyruvate dehydrogenase E1 component subunit beta-1, mitochondrial
TrEMBLA0A251U4Q11e-146A0A251U4Q1_HELAN; Pyruvate dehydrogenase E1 component subunit beta
STRINGXP_008459895.11e-124(Cucumis melo)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33480.24e-14NAC domain containing protein 41
Publications ? help Back to Top
  1. Kruft V,Eubel H,Jänsch L,Werhahn W,Braun HP
    Proteomic approach to identify novel mitochondrial proteins in Arabidopsis.
    Plant Physiol., 2001. 127(4): p. 1694-710
    [PMID:11743114]
  2. Tamaoki M, et al.
    Transcriptome analysis of O3-exposed Arabidopsis reveals that multiple signal pathways act mutually antagonistically to induce gene expression.
    Plant Mol. Biol., 2003. 53(4): p. 443-56
    [PMID:15010611]
  3. Wienkoop S, et al.
    Linking protein fractionation with multidimensional monolithic reversed-phase peptide chromatography/mass spectrometry enhances protein identification from complex mixtures even in the presence of abundant proteins.
    Rapid Commun. Mass Spectrom., 2004. 18(6): p. 643-50
    [PMID:15052571]
  4. LeClere S,Rampey RA,Bartel B
    IAR4, a gene required for auxin conjugate sensitivity in Arabidopsis, encodes a pyruvate dehydrogenase E1alpha homolog.
    Plant Physiol., 2004. 135(2): p. 989-99
    [PMID:15173569]
  5. Brugière S, et al.
    The hydrophobic proteome of mitochondrial membranes from Arabidopsis cell suspensions.
    Phytochemistry, 2004. 65(12): p. 1693-707
    [PMID:15276431]
  6. Finkemeier I, et al.
    The mitochondrial type II peroxiredoxin F is essential for redox homeostasis and root growth of Arabidopsis thaliana under stress.
    J. Biol. Chem., 2005. 280(13): p. 12168-80
    [PMID:15632145]
  7. Alexeyenko A,Millar AH,Whelan J,Sonnhammer EL
    Chromosomal clustering of nuclear genes encoding mitochondrial and chloroplast proteins in Arabidopsis.
    Trends Genet., 2006. 22(11): p. 589-93
    [PMID:16979780]
  8. Geisler-Lee J, et al.
    A predicted interactome for Arabidopsis.
    Plant Physiol., 2007. 145(2): p. 317-29
    [PMID:17675552]
  9. Hajduch M, et al.
    Systems analysis of seed filling in Arabidopsis: using general linear modeling to assess concordance of transcript and protein expression.
    Plant Physiol., 2010. 152(4): p. 2078-87
    [PMID:20118269]
  10. Ge W, et al.
    Proteomic analyses of apoplastic proteins from germinating Arabidopsis thaliana pollen.
    Biochim. Biophys. Acta, 2011. 1814(12): p. 1964-73
    [PMID:21798377]
  11. Carrie C,Venne AS,Zahedi RP,Soll J
    Identification of cleavage sites and substrate proteins for two mitochondrial intermediate peptidases in Arabidopsis thaliana.
    J. Exp. Bot., 2015. 66(9): p. 2691-708
    [PMID:25732537]
  12. Luethy MH,Miernyk JA,Randall DD
    The nucleotide and deduced amino acid sequences of a cDNA encoding the E1 beta-subunit of the Arabidopsis thaliana mitochondrial pyruvate dehydrogenase complex.
    Biochim. Biophys. Acta, 1994. 1187(1): p. 95-8
    [PMID:8061040]