PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Han006150
Organism
Helianthus annuus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Heliantheae alliance; Heliantheae; Helianthus
Family HD-ZIP
Protein Properties Length: 248aa    MW: 27622.8 Da    PI: 8.3254
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Han#S18764565PU_refUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox57.22.8e-18106160256
                T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
   Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                +k+ ++tk q   Lee+F+ + +++ ++++eLA+ l+L  rqV vWFqNrRa+ k
  Han006150 106 KKKLRLTKAQSGLLEEAFKLHTTLNPKQKQELARDLKLRPRQVEVWFQNRRARTK 160
                678899***********************************************98 PP
2HD-ZIP_I/II120.49.2e-39106195190
  HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 
                  +kk+rl+k q+ lLEe F+ +++L+p++K+elar+L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l++en+rL++ev+eL+++
    Han006150 106 KKKLRLTKAQSGLLEEAFKLHTTLNPKQKQELARDLKLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCNTLTDENQRLRQEVQELKAQ 195
                  59*************************************************************************************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.4E-1783160IPR009057Homeodomain-like
PROSITE profilePS5007116.568102162IPR001356Homeobox domain
SMARTSM003892.1E-14104166IPR001356Homeobox domain
SuperFamilySSF466892.31E-17104171IPR009057Homeodomain-like
CDDcd000862.73E-14106163No hitNo description
PfamPF000468.0E-16106160IPR001356Homeobox domain
PROSITE patternPS000270137160IPR017970Homeobox, conserved site
PfamPF021831.3E-11162196IPR003106Leucine zipper, homeobox-associated
SMARTSM003401.5E-24162205IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 248 aa     Download sequence    Send to blast
XKHRSIYTSF IQMDFHGFAE HALELRLSTT SSVAENTTNP IKKPSPSSDH CLEPSLTLAL  60
SGDSCGGSSF SIASAKRERE VPSEESERGG ENTSGEEDED GGVNGKKKLR LTKAQSGLLE  120
EAFKLHTTLN PKQKQELARD LKLRPRQVEV WFQNRRARTK LKQTEVDCEY LKRCCNTLTD  180
ENQRLRQEVQ ELKAQKVSPA LYMQLPTTTL TVCPSCEQIG DTKSATSKNP CTKKPSFFNP  240
FTSSSAAC
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1154162RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022005306.11e-132homeobox-leucine zipper protein HAT22-like isoform X2
SwissprotP466044e-71HAT22_ARATH; Homeobox-leucine zipper protein HAT22
TrEMBLQ399271e-173Q39927_HELAN; Homeodomain protein
STRINGVIT_00s0732g00010.t011e-78(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37790.14e-70HD-ZIP family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Liu T,Longhurst AD,Talavera-Rauh F,Hokin SA,Barton MK
    The Arabidopsis transcription factor ABIG1 relays ABA signaled growth inhibition and drought induced senescence.
    Elife, 2017.
    [PMID:27697148]
  3. Song L, et al.
    A transcription factor hierarchy defines an environmental stress response network.
    Science, 2017.
    [PMID:27811239]