PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Han006217
Organism
Helianthus annuus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Heliantheae alliance; Heliantheae; Helianthus
Family HSF
Protein Properties Length: 246aa    MW: 28643 Da    PI: 9.2161
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Han#S18713477PU_refUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind66.75.3e-2125540102
                   THHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXXXXXX CS
  HSF_DNA-bind  40 vLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekikrkks 102
                   +LpkyFkh+nf+SFvRQLn+YgFkk++ e+         weF++++F kg+++ll++i+r+k 
     Han006217   2 LLPKYFKHNNFSSFVRQLNTYGFKKIDPEQ---------WEFANDEFIKGQRHLLKNIHRRKP 55 
                   79************************9998.........*********************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004151.8E-15153IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.101.3E-19153IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467853.26E-17153IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004473.9E-17253IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.6E-10214IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS004340327IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.6E-101527IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 246 aa     Download sequence    Send to blast
ELLPKYFKHN NFSSFVRQLN TYGFKKIDPE QWEFANDEFI KGQRHLLKNI HRRKPVHSHS  60
TPPQGTSSSP LSSSEKKEYE DEIKKLKHET SSLRLQLLTH NQENQEKEHK LSFLRERLHT  120
IQLKQKKMMS FLAQVLEKPR ISSSRTQYLE SNSRKRRLLI STYLQGEANA EETENIEVHE  180
LINKLDSSLK FWVDFVNDVK TSSQEQDDVG DHDSKLDHAG SSTISFDHIN QDSRVKSKAS  240
GIDVNA
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022021057.11e-166heat stress transcription factor A-4c-like
TrEMBLA0A251RV601e-165A0A251RV60_HELAN; Putative heat stress transcription factor A-4b
STRINGVIT_12s0028g01410.t011e-71(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18880.17e-49heat shock transcription factor A4A