PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Han006269
Organism
Helianthus annuus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Heliantheae alliance; Heliantheae; Helianthus
Family MYB
Protein Properties Length: 245aa    MW: 27134.5 Da    PI: 7.1284
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Han#S48339636PU_refUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding34.83.8e-11653347
                     SS-HHHHHHHHHHHHHTTTT....-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg....tWktIartmgkgRtlkqcksrwqky 47
                      W++eEd+ + +a++ + +     +W+tIa+ ++ ++t  ++k ++q +
        Han006269  6 VWSKEEDKAFENAIATHWSQdskeQWDTIASLVP-TKTIPELKQHYQLL 53
                     7*********************************.***********965 PP
2Myb_DNA-binding38.72.3e-12132176347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT+eE+ l++ +  ++G+g+W++I+r     Rt+ q+ s+ qky
        Han006269 132 PWTEEEHRLFLLGLDKFGKGDWRSISRNYVISRTPTQVASHAQKY 176
                      7*****************************89************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512937.502258IPR017884SANT domain
SMARTSM007178.6E-6356IPR001005SANT/Myb domain
SuperFamilySSF466891.94E-9558IPR009057Homeodomain-like
PfamPF002493.2E-8552IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.9E-5552IPR009057Homeodomain-like
CDDcd001675.24E-8754No hitNo description
PROSITE profilePS5129416.887125181IPR017930Myb domain
SuperFamilySSF466896.28E-17127182IPR009057Homeodomain-like
TIGRFAMsTIGR015572.4E-17129179IPR006447Myb domain, plants
SMARTSM007174.7E-10129179IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.5E-10130175IPR009057Homeodomain-like
PfamPF002497.2E-11132176IPR001005SANT/Myb domain
CDDcd001671.34E-9132177No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 245 aa     Download sequence    Send to blast
MSSSKVWSKE EDKAFENAIA THWSQDSKEQ WDTIASLVPT KTIPELKQHY QLLVEDVDDI  60
EGGLIPIPKY LGEESSSSST NPQGSGGGGL NSNRRSSCNY SNGFSGFGHD SAGQSGGQGN  120
SRAEQERRKG IPWTEEEHRL FLLGLDKFGK GDWRSISRNY VISRTPTQVA SHAQKYFIRL  180
NSMNRDRRRT SIHDITSVNN GDXVVPPNPI TASQVVQPIN SWCTMNIRPT TQYAAGMVCT  240
DTMGX
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in young seedlings, developing leaves, sepals and trichomes. {ECO:0000269|PubMed:26243618}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that coordinates abscisic acid (ABA) biosynthesis and signaling-related genes via binding to the specific promoter motif 5'-(A/T)AACCAT-3'. Represses ABA-mediated salt (e.g. NaCl and KCl) stress tolerance. Regulates leaf shape and promotes vegetative growth. {ECO:0000269|PubMed:26243618}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salicylic acid (SA) and gibberellic acid (GA) (PubMed:16463103). Triggered by dehydration and salt stress (PubMed:26243618). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:26243618}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021983810.11e-142transcription factor MYBS1
SwissprotQ9FNN62e-75SRM1_ARATH; Transcription factor SRM1
TrEMBLA0A251TYS31e-141A0A251TYS3_HELAN; Putative duplicated homeodomain-like superfamily protein
STRINGPGSC0003DMT4000143501e-107(Solanum tuberosum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49010.18e-58MYB family protein
Publications ? help Back to Top
  1. Wang T, et al.
    Salt-Related MYB1 Coordinates Abscisic Acid Biosynthesis and Signaling during Salt Stress in Arabidopsis.
    Plant Physiol., 2015. 169(2): p. 1027-41
    [PMID:26243618]
  2. Chen YS, et al.
    Two MYB-related transcription factors play opposite roles in sugar signaling in Arabidopsis.
    Plant Mol. Biol., 2017. 93(3): p. 299-311
    [PMID:27866313]