PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Han006317
Organism
Helianthus annuus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Heliantheae alliance; Heliantheae; Helianthus
Family NAC
Protein Properties Length: 243aa    MW: 27514.3 Da    PI: 8.9287
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Han#S32083595PU_refUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM165.51.9e-51141381128
        NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kgel 99 
                lppGfrFhPtdeelvv+yLk+kv++ +l++ ++i+evd++k++Pw+Lp       +e +fFs+++ ky++g+r+nrat sgyWkatg dk+++++ ++++
  Han006317  14 LPPGFRFHPTDEELVVQYLKRKVQAFPLPA-SIIPEVDVCKSDPWELPGD---CGQERFFFSTKEVKYPNGNRSNRATVSGYWKATGLDKQIVTSkNNQV 109
                79****************************.89***************44...45799*********************************998757888 PP

        NAM 100 vglkktLvfykgrapkgektdWvmheyrl 128
                vg+kktLvfy+g+ p+g++tdW+mheyrl
  Han006317 110 VGMKKTLVFYRGKPPNGSRTDWIMHEYRL 138
                ***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.14E-6010161IPR003441NAC domain
PROSITE profilePS5100557.33414161IPR003441NAC domain
PfamPF023653.2E-2715138IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 243 aa     Download sequence    Send to blast
MEKLNFVKNG VLRLPPGFRF HPTDEELVVQ YLKRKVQAFP LPASIIPEVD VCKSDPWELP  60
GDCGQERFFF STKEVKYPNG NRSNRATVSG YWKATGLDKQ IVTSKNNQVV GMKKTLVFYR  120
GKPPNGSRTD WIMHEYRLAT PQLNNPAQGM EKWVICRIFL KKRGSNANKI DDEKERETIG  180
IVSDCKPVKS KPIFYDFMAT SKKRRTDLNL MPVSSSSGSS GITDDGSCEE HEEDSSNVDD  240
VSI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A6e-531216915171NO APICAL MERISTEM PROTEIN
1ut4_B6e-531216915171NO APICAL MERISTEM PROTEIN
1ut7_A6e-531216915171NO APICAL MERISTEM PROTEIN
1ut7_B6e-531216915171NO APICAL MERISTEM PROTEIN
3swm_A7e-531216918174NAC domain-containing protein 19
3swm_B7e-531216918174NAC domain-containing protein 19
3swm_C7e-531216918174NAC domain-containing protein 19
3swm_D7e-531216918174NAC domain-containing protein 19
3swp_A7e-531216918174NAC domain-containing protein 19
3swp_B7e-531216918174NAC domain-containing protein 19
3swp_C7e-531216918174NAC domain-containing protein 19
3swp_D7e-531216918174NAC domain-containing protein 19
4dul_A6e-531216915171NAC domain-containing protein 19
4dul_B6e-531216915171NAC domain-containing protein 19
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Up-regulated during xylem vessel element differentiation. {ECO:0000269|PubMed:20388856}.
UniprotTISSUE SPECIFICITY: Expressed in xylem and phloem cells in roots and inflorescence stems (PubMed:20388856). Highly expressed in senescent leaves. Expressed in roots, and abscission and dehiscence tissues, such as axils of bracts and abscission zones in cauline leaves and siliques (PubMed:21673078). {ECO:0000269|PubMed:20388856, ECO:0000269|PubMed:21673078}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional repressor that negatively regulates the expression of genes involved in xylem vessel formation. Represses the transcriptional activation activity of NAC030/VND7, which regulates protoxylem vessel differentiation by promoting immature xylem vessel-specific genes expression (PubMed:20388856). Transcriptional activator that regulates the COLD-REGULATED (COR15A and COR15B) and RESPONSIVE TO DEHYDRATION (LTI78/RD29A and LTI65/RD29B) genes by binding directly to their promoters. Mediates signaling crosstalk between salt stress response and leaf aging process (PubMed:21673078). May play a role in DNA replication of mungbean yellow mosaic virus (PubMed:24442717). {ECO:0000269|PubMed:20388856, ECO:0000269|PubMed:21673078, ECO:0000269|PubMed:24442717}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By abscisic acid (ABA) and salt stress. {ECO:0000269|PubMed:21673078}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021997237.10.0NAC domain-containing protein 83-like
SwissprotQ9FY937e-97NAC83_ARATH; NAC domain-containing protein 83
TrEMBLA0A251T3H51e-180A0A251T3H5_HELAN; Putative NAC domain containing protein 83
STRINGcassava4.1_014491m1e-111(Manihot esculenta)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13180.14e-98NAC domain containing protein 83
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]