PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Han006369
Organism
Helianthus annuus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Heliantheae alliance; Heliantheae; Helianthus
Family MYB
Protein Properties Length: 242aa    MW: 27075 Da    PI: 8.4963
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Han#S48352486PU_refUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.88.8e-171461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg+W+ eEd+ll ++++ +G g+W++ +++ g+ R++k+c++rw +yl
        Han006369 14 RGAWSDEEDKLLTNYIQTHGEGQWRSLPSKAGLLRCGKSCRLRWMNYL 61
                     89******************************99************97 PP
2Myb_DNA-binding55.41.4e-1767112148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg +T+eEd+++++++  +G++ W+ Ia +++ gRt+ ++k++w+++l
        Han006369  67 RGTFTAEEDDIIIRLHSIHGNR-WSFIATELP-GRTDXEIKNHWNSHL 112
                      899*******************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.924961IPR017930Myb domain
SuperFamilySSF466891.91E-2911108IPR009057Homeodomain-like
SMARTSM007171.1E-121363IPR001005SANT/Myb domain
PfamPF002494.2E-151461IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.9E-231568IPR009057Homeodomain-like
CDDcd001671.70E-101661No hitNo description
PROSITE profilePS5129428.43862116IPR017930Myb domain
SMARTSM007171.1E-1766114IPR001005SANT/Myb domain
PfamPF002497.6E-1667112IPR001005SANT/Myb domain
CDDcd001672.44E-1369112No hitNo description
Gene3DG3DSA:1.10.10.608.9E-2769116IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 242 aa     Download sequence    Send to blast
MGRAPCCAKV GLHRGAWSDE EDKLLTNYIQ THGEGQWRSL PSKAGLLRCG KSCRLRWMNY  60
LRPGIKRGTF TAEEDDIIIR LHSIHGNRWS FIATELPGRT DXEIKNHWNS HLKRKVTEGE  120
NDPDNSKKTK KKRKTDNKKS TKVKTVEKPV ETVSHQMASS CSSQSVSLTL RKNDSFDNGV  180
MSGASSCCTV DQGETDRLAT DFPWPDGSPL FEIDGSGSMV DDQSLPFDGC DLSTRVMTXV  240
RC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A6e-28121165108B-MYB
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1112133KRKVTEGENDPDNSKKTKKKRK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022022105.11e-171transcription factor MYB8-like
TrEMBLA0A251RL791e-169A0A251RL79_HELAN; Putative homeodomain-like protein
STRINGEOY239523e-69(Theobroma cacao)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49330.11e-60myb domain protein 111