PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Han006414
Organism
Helianthus annuus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Heliantheae alliance; Heliantheae; Helianthus
Family MIKC_MADS
Protein Properties Length: 241aa    MW: 27770.6 Da    PI: 8.7085
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-169a-Helianthus_annuus-37554PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF87.48e-281059251
               ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
     SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
               ri+n++ rqvtfskRr g+lKKA+EL +LCdaev viifsstgkl+e+s+
  Han006414 10 RIDNSTSRQVTFSKRRSGLLKKAKELAILCDAEVGVIIFSSTGKLHEFSN 59
               8***********************************************95 PP
2K-box90.53e-3077172499
      K-box   4 ssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 
                +++    +++ + +q+e+a Lk+++++Lq+++R+++Ge+L+ Ls+++Lq +e+qLe sl++iR+kK++ll+e+ieel++k + +++en +L kk++
  Han006414  77 QQQITSPTSEVKFWQREAAMLKQQLQSLQENHRQMMGEELSGLSVQDLQVMENQLEMSLRNIRTKKDQLLFEEIEELKRKGNIIHHENVELCKKVN 172
                34444688899********************************************************************************99985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004326.1E-39160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006631.314161IPR002100Transcription factor, MADS-box
CDDcd002651.12E-42278No hitNo description
SuperFamilySSF554551.57E-31282IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004042.1E-27323IPR002100Transcription factor, MADS-box
PfamPF003193.5E-251057IPR002100Transcription factor, MADS-box
PRINTSPR004042.1E-272338IPR002100Transcription factor, MADS-box
PRINTSPR004042.1E-273859IPR002100Transcription factor, MADS-box
PfamPF014867.7E-2982171IPR002487Transcription factor, K-box
PROSITE profilePS5129715.97987177IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 241 aa     Download sequence    Send to blast
MGRGKIVIRR IDNSTSRQVT FSKRRSGLLK KAKELAILCD AEVGVIIFSS TGKLHEFSNT  60
SMKSVIGRYH KAKEEQQQQI TSPTSEVKFW QREAAMLKQQ LQSLQENHRQ MMGEELSGLS  120
VQDLQVMENQ LEMSLRNIRT KKDQLLFEEI EELKRKGNII HHENVELCKK VNHIREENTE  180
LYKQVYGIRE TDSTNRNVFL TNALSIRDDP HATIHLQLSQ PDQHEAPEAS LQSTSLGLQL  240
H
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A4e-20187187MEF2C
5f28_B4e-20187187MEF2C
5f28_C4e-20187187MEF2C
5f28_D4e-20187187MEF2C
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Ubiquitous. {ECO:0000269|PubMed:14701936}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022039893.11e-178MADS-box transcription factor 23-like isoform X1
RefseqXP_022039894.11e-178MADS-box transcription factor 23-like isoform X1
RefseqXP_022039895.11e-178MADS-box transcription factor 23-like isoform X1
RefseqXP_022039897.11e-178MADS-box transcription factor 23-like isoform X1
SwissprotQ6EP491e-100MAD27_ORYSJ; MADS-box transcription factor 27
TrEMBLA0A251UVI91e-176A0A251UVI9_HELAN; Putative MADS-box transcription factor 27
STRINGXP_009595408.11e-122(Nicotiana tomentosiformis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57230.11e-102AGAMOUS-like 16
Publications ? help Back to Top
  1. Puig J, et al.
    Analysis of the expression of the AGL17-like clade of MADS-box transcription factors in rice.
    Gene Expr. Patterns, 2013 Jun-Jul. 13(5-6): p. 160-70
    [PMID:23466806]
  2. Yu C, et al.
    The effects of fluctuations in the nutrient supply on the expression of five members of the AGL17 clade of MADS-box genes in rice.
    PLoS ONE, 2014. 9(8): p. e105597
    [PMID:25140876]