PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Han006448

Organism

Helianthus annuus

Taxonomic ID

4232

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Heliantheae alliance; Heliantheae; Helianthus

Family

NAC

Protein Properties

Length: 240aa MW: 26984.8 Da PI: 10.0156

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Han#S48337822	PU_unref	Unigene	View CDS
PUT-169a-Helianthus_annuus-38348	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	175.3	1.7e-54	16	142	1	129
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelv 100 +ppGfrFhPtdeel+++yL +kv ++++ + ++i+evd++k+ePw+Lpk +k + kewyfF+ +dkky+tg r+nrat++gyWkatgkdke+ + ++ lv Han006448 16 MPPGFRFHPTDEELITHYLSNKVVDNNFVA-KAIAEVDMNKIEPWELPKLAKLGGKEWYFFCVNDKKYPTGLRTNRATAAGYWKATGKDKEISR-GKLLV 113 79***********************999.89***********8888899*********************************99.999 PP NAM 101 glkktLvfykgrapkgektdWvmheyrle 129 g+kktLvfy grapkgekt+Wv+heyrle Han006448 114 GMKKTLVFYMGRAPKGEKTNWVIHEYRLE 142 ***************************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	3.53E-60	12	166	IPR003441	NAC domain
PROSITE profile	PS51005	56.272	16	166	IPR003441	NAC domain
Pfam	PF02365	7.8E-29	17	141	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 240 aa Download sequence Send to blast
MEKLSGHGQE EDQMDMPPGF RFHPTDEELI THYLSNKVVD NNFVAKAIAE VDMNKIEPWE 60 LPKLAKLGGK EWYFFCVNDK KYPTGLRTNR ATAAGYWKAT GKDKEISRGK LLVGMKKTLV 120 FYMGRAPKGE KTNWVIHEYR LEGKSLLSNL PRSAKNEWVN CRVVHKTSGG KKLHISDLTR 180 TDSGGVATSL PPLESPQIIP NLSXSIHVPC FSIRSNSKHS KNMLNISSQP ISTQSIPFVL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	5e-55	9	172	7	171	NO APICAL MERISTEM PROTEIN
1ut4_B	5e-55	9	172	7	171	NO APICAL MERISTEM PROTEIN
1ut7_A	5e-55	9	172	7	171	NO APICAL MERISTEM PROTEIN
1ut7_B	5e-55	9	172	7	171	NO APICAL MERISTEM PROTEIN
3swm_A	4e-55	9	172	10	174	NAC domain-containing protein 19
3swm_B	4e-55	9	172	10	174	NAC domain-containing protein 19
3swm_C	4e-55	9	172	10	174	NAC domain-containing protein 19
3swm_D	4e-55	9	172	10	174	NAC domain-containing protein 19
3swp_A	4e-55	9	172	10	174	NAC domain-containing protein 19
3swp_B	4e-55	9	172	10	174	NAC domain-containing protein 19
3swp_C	4e-55	9	172	10	174	NAC domain-containing protein 19
3swp_D	4e-55	9	172	10	174	NAC domain-containing protein 19
4dul_A	5e-55	9	172	7	171	NAC domain-containing protein 19
4dul_B	5e-55	9	172	7	171	NAC domain-containing protein 19
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Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed at low levels in leaves. {ECO:0000269\|PubMed:17098808}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed post-transcriptionally by miR164. {ECO:0000269\|PubMed:15294871, ECO:0000269\|PubMed:17098808, ECO:0000269\|PubMed:18305205, ECO:0000305\|PubMed:15723790}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022012914.1	1e-155	NAC domain-containing protein 79-like
Swissprot	Q9FLR3	1e-106	NAC79_ARATH; NAC domain-containing protein 79
TrEMBL	A0A251SC19	1e-154	A0A251SC19_HELAN; Putative NAC domain containing protein
STRING	XP_010258290.1	1e-106	(Nelumbo nucifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G07680.1	1e-107	NAC domain containing protein 80

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Vidal EA,Álvarez JM,Gutiérrez RA Nitrate regulation of AFB3 and NAC4 gene expression in Arabidopsis roots depends on NRT1.1 nitrate transport function. Plant Signal Behav, 2014. 9(3): p. e28501 [PMID:24642706] Lee MH,Jeon HS,Kim HG,Park OK An Arabidopsis NAC transcription factor NAC4 promotes pathogen-induced cell death under negative regulation by microRNA164. New Phytol., 2017. 214(1): p. 343-360 [PMID:28032643]