PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Han006483

Organism

Helianthus annuus

Taxonomic ID

4232

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Heliantheae alliance; Heliantheae; Helianthus

Family

DBB

Protein Properties

Length: 239aa MW: 27117 Da PI: 4.5825

Description

DBB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PUT-169a-Helianthus_annuus-53341	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	18.4	4.6e-06	4	34	5	35
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHk 35 +C+ ++e + +C+++ +lC +C H+ Han006483 4 NCDYCGEARSMVYCRSDAAYLCLSCDRDVHS 34 6*************************99995 PP
2	zf-B_box	27.1	8.9e-09	47	88	5	39
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg.......Htv 39 +C+ ++++++ Ced +q +C++C +H+g H++ Han006483 47 VCDVCNSQPAVVRCEDEKQSFCQNCDWVSHNGdnidastHNR 88 8*****************************997777777766 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00021	4.15E-6	5	35	No hit	No description
PROSITE profile	PS50119	9.143	5	47	IPR000315	B-box-type zinc finger
SMART	SM00336	3.4E-6	5	47	IPR000315	B-box-type zinc finger
PROSITE profile	PS50119	8.66	43	91	IPR000315	B-box-type zinc finger
Pfam	PF00643	8.0E-6	46	87	IPR000315	B-box-type zinc finger
CDD	cd00021	6.28E-5	47	91	No hit	No description
SMART	SM00336	2.1	48	91	IPR000315	B-box-type zinc finger

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005622	Cellular Component	intracellular
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 239 aa Download sequence Send to blast
MGYNCDYCGE ARSMVYCRSD AAYLCLSCDR DVHSANPLSQ RHMRTLVCDV CNSQPAVVRC 60 EDEKQSFCQN CDWVSHNGDN IDASTHNRQT LNCYSGCPSA TELSSIWFFM SESCEQEMGS 120 MSIVDDNTQE PSGNSKIQDS SVNIEASKVV DDGLYDDYTM DEVDMNIENY EEMFGVGHND 180 PKHLFAKDGI DSLFGKKIKQ RSLQYGTTRC XHAPRWIIMS CKPNRPMYAL TVYIHFDLL

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021989484.1	1e-146	zinc finger protein CONSTANS-LIKE 10-like
Refseq	XP_021989485.1	1e-146	zinc finger protein CONSTANS-LIKE 10-like
Refseq	XP_021989486.1	1e-146	zinc finger protein CONSTANS-LIKE 10-like
Swissprot	Q9LUA9	1e-69	COL10_ARATH; Zinc finger protein CONSTANS-LIKE 10
TrEMBL	A0A251TQ83	1e-143	A0A251TQ83_HELAN; Putative B-box-type zinc finger, CCT domain protein
STRING	POPTR_0014s16870.1	1e-71	(Populus trichocarpa)
STRING	Bra001264.1-P	7e-72	(Brassica rapa)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G48250.1	4e-72	B-box type zinc finger protein with CCT domain

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]