PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Han006694
Organism
Helianthus annuus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Heliantheae alliance; Heliantheae; Helianthus
Family MIKC_MADS
Protein Properties Length: 231aa    MW: 26760.6 Da    PI: 9.9579
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-169a-Helianthus_annuus-42382PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF93.59.6e-30959151
               S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
     SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
               krienk+ rqvtfskRr+g+lKKA+E+SvLCda+va+i+fs++gkl+eys+
  Han006694  9 KRIENKISRQVTFSKRRTGLLKKAHEISVLCDADVALIVFSTKGKLFEYST 59
               79***********************************************96 PP
2K-box96.25.1e-32811747100
      K-box   7 ksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100
                ++ e+++++s++ e++kLk++ie L++++Rh++Ge+Le+L+l+eLq++eqq+e++lk+iR+kKn++++e+i+el kke++lqe+n++L+kkl+e
  Han006694  81 TAPETETQASWTLESSKLKARIEVLEKNIRHYVGEELEQLNLRELQNVEQQIETALKRIRTKKNQVMHESISELHKKERALQERNNSLSKKLKE 174
                455677889**********************************************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004324.6E-39160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006631.679161IPR002100Transcription factor, MADS-box
CDDcd002655.19E-40276No hitNo description
SuperFamilySSF554551.14E-33292IPR002100Transcription factor, MADS-box
PRINTSPR004042.7E-30323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003192.8E-251057IPR002100Transcription factor, MADS-box
PRINTSPR004042.7E-302338IPR002100Transcription factor, MADS-box
PRINTSPR004042.7E-303859IPR002100Transcription factor, MADS-box
PfamPF014868.1E-2685172IPR002487Transcription factor, K-box
PROSITE profilePS5129716.1488178IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 231 aa     Download sequence    Send to blast
MGRGRVQLKR IENKISRQVT FSKRRTGLLK KAHEISVLCD ADVALIVFST KGKLFEYSTH  60
SSMETILERY ERYSYAEKLL TAPETETQAS WTLESSKLKA RIEVLEKNIR HYVGEELEQL  120
NLRELQNVEQ QIETALKRIR TKKNQVMHES ISELHKKERA LQERNNSLSK KLKENEKNVE  180
QQNSTQPYTV PSFGTSSGPF IGAAMREEEL AQTNTAPTTI MPLWMIRHIN Q
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A6e-21174173MEF2 CHIMERA
6byy_B6e-21174173MEF2 CHIMERA
6byy_C6e-21174173MEF2 CHIMERA
6byy_D6e-21174173MEF2 CHIMERA
6bz1_A6e-21174173MEF2 CHIMERA
6bz1_B6e-21174173MEF2 CHIMERA
6bz1_C6e-21174173MEF2 CHIMERA
6bz1_D6e-21174173MEF2 CHIMERA
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in tendrils and flowers. {ECO:0000269|PubMed:15247405}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022005796.11e-170truncated transcription factor CAULIFLOWER A-like isoform X3
SwissprotD7SMN61e-100FULL_VITVI; Agamous-like MADS-box protein FUL-L
TrEMBLA0A251SKI41e-168A0A251SKI4_HELAN; Putative agamous-like protein
STRINGXP_004304203.11e-101(Fragaria vesca)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60910.12e-82AGAMOUS-like 8
Publications ? help Back to Top
  1. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]
  2. Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
    Genome-wide analysis of MIKCC-type MADS box genes in grapevine.
    Plant Physiol., 2009. 149(1): p. 354-69
    [PMID:18997115]
  3. Grimplet J,Martínez-Zapater JM,Carmona MJ
    Structural and functional annotation of the MADS-box transcription factor family in grapevine.
    BMC Genomics, 2016. 17: p. 80
    [PMID:26818751]