PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Han006749
Organism
Helianthus annuus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Heliantheae alliance; Heliantheae; Helianthus
Family Trihelix
Protein Properties Length: 228aa    MW: 25790.9 Da    PI: 7.267
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Han#S32074995PU_refUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix75.49.4e-24100195186
   trihelix   1 rWtkqevlaLiearremeerlrrgk.........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsessstcpyfdqle 86 
                +W + +v++Li+a+++++e+  +           +kk++W++vsk+m+erg  +sp+qC++k+++lnkryk+++e+ +++ ++e++++ +++d ++
  Han006749 100 KWNDLMVRLLITAVSYIGEDAADYGgsrrkfsnlQKKGKWKSVSKVMAERGHFVSPQQCEDKFNDLNKRYKRLNEILGRGtSCEVVENPSLLDLMD 195
                7**************9998888632234556677**********************************************669******9999998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138375.5E-2298221No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 228 aa     Download sequence    Send to blast
MEGGNLSSSG GSGGSFDLQR VHHHQQQGSM ILPCVHENFP FRIGTETIPD CNRTISLAAE  60
FGKGETRATS GEEDEPSFTA QDDRAKNVNM NFASPWQRVK WNDLMVRLLI TAVSYIGEDA  120
ADYGGSRRKF SNLQKKGKWK SVSKVMAERG HFVSPQQCED KFNDLNKRYK RLNEILGRGT  180
SCEVVENPSL LDLMDHVPEK LKEEVRKILS SKHLHYEEMC SYHNGDRV
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021997420.11e-156uncharacterized protein LOC110894505
RefseqXP_021997421.11e-156uncharacterized protein LOC110894505
TrEMBLA0A124SE091e-103A0A124SE09_CYNCS; Uncharacterized protein (Fragment)
TrEMBLA0A2J6LR101e-102A0A2J6LR10_LACSA; Uncharacterized protein
STRINGXP_009590352.11e-92(Nicotiana tomentosiformis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G21200.12e-75sequence-specific DNA binding transcription factors