PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Han006783

Organism

Helianthus annuus

Taxonomic ID

4232

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Heliantheae alliance; Heliantheae; Helianthus

Family

Trihelix

Protein Properties

Length: 227aa MW: 26999.8 Da PI: 8.7794

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Han#S48324781	PU_ref	Unigene	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	98.9	4.4e-31	140	226	1	85
trihelix 1 rWtkqevlaLiearremeerlr...rgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdql 85 rW+++evlaLi++r+++++ ++ ++ +++ lWe++s+ m e g++rs+k+Ckekwen+nk+++k+k+ +kkr s +s+tcpy+++l Han006783 140 RWPRDEVLALINIRSNVNNGIGgnsEEHARGSLWERISQGMLELGYKRSAKRCKEKWENINKYFRKTKDANKKR-SLESRTCPYYHEL 226 8*****************9954445699***************************************8.89999****99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd12203	4.68E-21	139	207	No hit	No description
Pfam	PF13837	4.1E-20	139	226	No hit	No description
PROSITE profile	PS50090	6.957	140	200	IPR017877	Myb-like domain

Sequence ? help Back to Top
Protein Sequence Length: 227 aa Download sequence Send to blast
VKGLCVDLVN KMMAQQEEMH KKLLEDMANR DEEKRKREEA WRKEEMERMQ MEIQIREHEQ 60 EMARDRQSTI TEFLNKITSF DNKIQIPFDI NLQDLLFEAT NIDKPMSLSE ITKIPSLQNI 120 TDRKYPNHDQ AIAKDDIGKR WPRDEVLALI NIRSNVNNGI GGNSEEHARG SLWERISQGM 180 LELGYKRSAK RCKEKWENIN KYFRKTKDAN KKRSLESRTC PYYHELK

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that binds specific DNA sequence. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021969292.1	1e-165	trihelix transcription factor GTL2
Swissprot	Q8H181	1e-65	GTL2_ARATH; Trihelix transcription factor GTL2
TrEMBL	A0A251UGX5	1e-164	A0A251UGX5_HELAN; Putative duplicated homeodomain-like superfamily protein
STRING	Cagra.0509s0002.1.p	2e-71	(Capsella grandiflora)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G28300.1	4e-52	Trihelix family protein

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]