PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Han006875

Organism

Helianthus annuus

Taxonomic ID

4232

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Heliantheae alliance; Heliantheae; Helianthus

Family

bHLH

Protein Properties

Length: 224aa MW: 25413.7 Da PI: 5.2354

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Han#S32091529	PU_ref	Unigene	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	27.2	7e-09	71	118	4	54
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++ rEr+RR+ +N++f+eL + l ++ + +K +iL A++ ++ L Han006875 71 NKACRERQRREMLNNRFFELSSTLEPD---RPATTDKLAILGDAIRVLNRL 118 6789********************9...8899**********99887 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	2.88E-11	59	132	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	11.681	67	118	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	9.51E-6	70	123	No hit	No description
Gene3D	G3DSA:4.10.280.10	1.5E-10	70	140	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.8E-6	70	118	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	3.0E-6	73	124	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 224 aa Download sequence Send to blast
MDPFEDANWD LIDYDSLIND VAPAHLYWAD QSAAVQVDAS VAGFAPLEKE CTEKECSRKR 60 GRSNSCSKAE NKACRERQRR EMLNNRFFEL SSTLEPDRPA TTDKLAILGD AIRVLNRLKS 120 ESQDYKETNE KLLEEIKTLK AEKNELREEK LVLKEEKAKL EQQVKAMTNN IPPPGFMAPH 180 PAAFQAGANK MPVFPGYGYI PMWQYLPQSS CDTSHDHELR PPAA

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Han.1234	0.0	bud

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022030019.1	1e-168	transcription factor bHLH104-like
Swissprot	Q8L467	2e-68	BH104_ARATH; Transcription factor bHLH104
TrEMBL	A0A251VBG6	1e-166	A0A251VBG6_HELAN; Putative myc-type, basic helix-loop-helix (BHLH) domain-containing protein
STRING	Solyc09g089870.2.1	5e-94	(Solanum lycopersicum)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G14410.2	2e-56	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Li X,Zhang H,Ai Q,Liang G,Yu D Two bHLH Transcription Factors, bHLH34 and bHLH104, Regulate Iron Homeostasis in Arabidopsis thaliana. Plant Physiol., 2016. 170(4): p. 2478-93 [PMID:26921305] Liang G,Zhang H,Li X,Ai Q,Yu D bHLH transcription factor bHLH115 regulates iron homeostasis in Arabidopsis thaliana. J. Exp. Bot., 2017. 68(7): p. 1743-1755 [PMID:28369511] Wang C,Yao X,Yu D,Liang G Fe-deficiency-induced expression of bHLH104 enhances Fe-deficiency tolerance of Arabidopsis thaliana. Planta, 2017. 246(3): p. 421-431 [PMID:28451750] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470] Min JH, et al. Arabidopsis Basic Helix-Loop-Helix 34 (bHLH34) Is Involved in Glucose Signaling through Binding to a GAGA Cis-Element. Front Plant Sci, 2017. 8: p. 2100 [PMID:29321786] Min JH, et al. A basic helix-loop-helix 104 (bHLH104) protein functions as a transcriptional repressor for glucose and abscisic acid signaling in Arabidopsis. Plant Physiol. Biochem., 2019. 136: p. 34-42 [PMID:30639920]