PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Han006966

Organism

Helianthus annuus

Taxonomic ID

4232

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Heliantheae alliance; Heliantheae; Helianthus

Family

SBP

Protein Properties

Length: 221aa MW: 25589.5 Da PI: 8.4976

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PUT-169a-Helianthus_annuus-6007	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	126.4	1.1e-39	74	150	2	78
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 C v+gC+adls +++yhrrh+vCe+hsk+pvv++ g+eqrfCqqCsrfh+l efDe krsCr+rL++hn+rrrk+++ Han006966 74 CLVDGCRADLSACRDYHRRHRVCETHSKTPVVTICGKEQRFCQQCSRFHSLGEFDEVKRSCRKRLDGHNRRRRKARP 150 **************************************************************************875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1100.10	6.7E-32	67	135	IPR004333	Transcription factor, SBP-box
PROSITE profile	PS51141	31.197	71	148	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	2.22E-36	72	154	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	1.1E-29	74	147	IPR004333	Transcription factor, SBP-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 221 aa Download sequence Send to blast
MDWVFTPSSS WDLTELDIDD FDLLPENNQD MEAAFSGSDR DGTDGILSEQ KHSIMPSCSS 60 KKQRVESNEQ QVSCLVDGCR ADLSACRDYH RRHRVCETHS KTPVVTICGK EQRFCQQCSR 120 FHSLGEFDEV KRSCRKRLDG HNRRRRKARP ESMYFNYGSF FTNHQGTKLL HFGGSPATTF 180 GDWREKHNLK PKFQVTAEQR TPSDSYARSA CQKRRFRFCG V

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ul4_A	1e-26	74	147	11	84	squamosa promoter binding protein-like 4
Search in ModeBase

Expression -- Description ? help Back to Top
Source	Description
Uniprot	DEVELOPMENTAL STAGE: Weak increase of expression during floral induction. {ECO:0000269\|PubMed:14573523}.

Functional Description ? help Back to Top
Source	Description
UniProt	Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000250}.
UniProt	Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000250}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Negatively regulated by microRNAs miR156 and miR157. {ECO:0000305\|PubMed:12202040}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021982433.1	1e-157	teosinte glume architecture 1-like
Refseq	XP_021982434.1	1e-157	teosinte glume architecture 1-like
Swissprot	B9DI20	1e-43	SP13A_ARATH; Squamosa promoter-binding-like protein 13A
Swissprot	P0DI11	1e-43	SP13B_ARATH; Squamosa promoter-binding-like protein 13B
TrEMBL	A0A251TYL9	1e-131	A0A251TYL9_HELAN; Putative transcription factor, SBP-box
STRING	VIT_14s0068g01780.t01	2e-58	(Vitis vinifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G50670.1	4e-46	SBP family protein

Publications ? help Back to Top
Jorgensen SA,Preston JC Differential SPL gene expression patterns reveal candidate genes underlying flowering time and architectural differences in Mimulus and Arabidopsis. Mol. Phylogenet. Evol., 2014. 73: p. 129-39 [PMID:24508602] Xu M, et al. Developmental Functions of miR156-Regulated SQUAMOSA PROMOTER BINDING PROTEIN-LIKE (SPL) Genes in Arabidopsis thaliana. PLoS Genet., 2016. 12(8): p. e1006263 [PMID:27541584]