PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Han007180
Organism
Helianthus annuus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Heliantheae alliance; Heliantheae; Helianthus
Family DBB
Protein Properties Length: 211aa    MW: 23759.9 Da    PI: 4.5072
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Han#S48339228PU_refUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box19.91.5e-06544639
   zf-B_box  6 CpeHeekelqlfCedCqqllCedClleeHkg......Htv 39
               C+ + e +   +C++++ +lC +C  + H+       H++
  Han007180  5 CDYCREARSMVYCRSDEAYLCLSCDRNVHSAnalskrHSR 44
               *****************************65677777765 PP
2zf-B_box21.16.6e-074688439
   zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg.......Htv 39
                +C++++ +++   C + +  lC++C  e+H++       H++
  Han007180 46 LVCDKCNTQPAFVRCVEEKLSLCQNCDWEGHNRpnsastsHNR 88
               68*****************************888889988554 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003361.1E-6447IPR000315B-box-type zinc finger
CDDcd000214.31E-6547No hitNo description
PROSITE profilePS501199.783547IPR000315B-box-type zinc finger
PROSITE profilePS501198.6174391IPR000315B-box-type zinc finger
CDDcd000212.74E-44776No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 211 aa     Download sequence    Send to blast
MGYSCDYCRE ARSMVYCRSD EAYLCLSCDR NVHSANALSK RHSRTLVCDK CNTQPAFVRC  60
VEEKLSLCQN CDWEGHNRPN SASTSHNRHT LNCYKGCPSA ADLSSIWSFM CDPPPVIDST  120
CEQXMGLMSI ADNKNGQNLS LSTENNNLQN VIQQPNPKDS STFKVSDTKG VEQFIDDXFY  180
DDFNMDEVDL SIEKYEVLFG VGSNDLENLF A
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021999985.11e-155zinc finger protein CONSTANS-LIKE 10-like
SwissprotQ9LUA96e-69COL10_ARATH; Zinc finger protein CONSTANS-LIKE 10
TrEMBLA0A251SP891e-153A0A251SP89_HELAN; Putative B-box type zinc finger protein with CCT domain-containing protein
STRINGGLYMA13G11592.13e-76(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48250.12e-71B-box type zinc finger protein with CCT domain
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]