PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Han007197
Common Nameham91
Organism
Helianthus annuus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Heliantheae alliance; Heliantheae; Helianthus
Family MIKC_MADS
Protein Properties Length: 210aa    MW: 24575.8 Da    PI: 8.43
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Han#S18764428PU_refUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF93.88e-301059251
               ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
     SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
               +ien++nrqvt+skRrngi+KKA+EL vLCda+v++i+fs+tgk++ey+s
  Han007197 10 KIENNTNRQVTYSKRRNGIFKKAHELTVLCDAKVSLIMFSNTGKFHEYIS 59
               79**********************************************86 PP
2K-box59.91e-2071160189
      K-box   1 yqkssgksleeakaeslqqelakLkkeienLqreqRhl.lGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqe 89 
                yq++ g +l+++++e++q+ l+kLk+ +++L+re+R++ lGedL+ L++++L  Leq++++sl+ +R++K + l +   +l+   + +++
  Han007197  71 YQTTLGFDLWSSHYERMQETLKKLKDSNNKLRREIRQRvLGEDLDGLDMNDLTILEQHMQDSLTVVRERKVKNLEQRNCNLRLDYDTIHQ 160
                667777789***************************8538*******************************9999888777766665555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006632.268161IPR002100Transcription factor, MADS-box
SMARTSM004325.1E-40160IPR002100Transcription factor, MADS-box
CDDcd002652.86E-39280No hitNo description
SuperFamilySSF554551.03E-37295IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-27323IPR002100Transcription factor, MADS-box
PfamPF003191.2E-241057IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-272338IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-273859IPR002100Transcription factor, MADS-box
PfamPF014861.4E-1282158IPR002487Transcription factor, K-box
PROSITE profilePS5129713.42284171IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 210 aa     Download sequence    Send to blast
MGRGRIEIQK IENNTNRQVT YSKRRNGIFK KAHELTVLCD AKVSLIMFSN TGKFHEYISP  60
STTTKKIYDM YQTTLGFDLW SSHYERMQET LKKLKDSNNK LRREIRQRVL GEDLDGLDMN  120
DLTILEQHMQ DSLTVVRERK VKNLEQRNCN LRLDYDTIHQ LEKKYGMVEN EVGYESTIAY  180
SNLYGFCENP NNNIIHGSGS GYEPHGLRLD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A3e-15159159MEF2C
5f28_B3e-15159159MEF2C
5f28_C3e-15159159MEF2C
5f28_D3e-15159159MEF2C
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed during flower development in stamens, petals and carpels (PubMed:17920788). Expressed in fruits and seeds (PubMed:17920788). {ECO:0000269|PubMed:17920788}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022015758.11e-152floral homeotic protein PMADS 1-like isoform X2
SwissprotQ003J24e-84TM6_VITVI; Agamous-like MADS-box protein TM6
TrEMBLQ84LC11e-155Q84LC1_HELAN; MADS-box transcriptional factor HAM91
STRINGVIT_04s0023g02820.t015e-81(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54340.11e-64MIKC_MADS family protein
Publications ? help Back to Top
  1. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]
  2. Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
    Genome-wide analysis of MIKCC-type MADS box genes in grapevine.
    Plant Physiol., 2009. 149(1): p. 354-69
    [PMID:18997115]
  3. Grimplet J,Martínez-Zapater JM,Carmona MJ
    Structural and functional annotation of the MADS-box transcription factor family in grapevine.
    BMC Genomics, 2016. 17: p. 80
    [PMID:26818751]