PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Han007216
Organism
Helianthus annuus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Heliantheae alliance; Heliantheae; Helianthus
Family HD-ZIP
Protein Properties Length: 210aa    MW: 23688.6 Da    PI: 4.3496
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-169a-Helianthus_annuus-7187PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox60.42.8e-19353656
               S--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
   Homeobox  6 tftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
               ++++eq++ L+  Fe+++++  e+++eLAkklgL+ rqV vWFqNrRa+ k
  Han007216  3 RLSPEQVHMLKMSFEEENKLEPERKTELAKKLGLQPRQVAVWFQNRRARCK 53
               689**********************************************99 PP
2HD-ZIP_I/II126.89.7e-41290492
  HD-ZIP_I/II  4 rrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92
                 rrls eqv++L +sFeee+kLeperK+ela++LglqprqvavWFqnrRAR ktk lE+dy++Lk++yd+l+++ e++ ke+e+L++e+ 
    Han007216  2 RRLSPEQVHMLKMSFEEENKLEPERKTELAKKLGLQPRQVAVWFQNRRARCKTKTLERDYNRLKSCYDSLTADYESIVKENEKLKAEVV 90
                 8************************************************************************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003892.1E-15159IPR001356Homeobox domain
PROSITE profilePS5007116.892155IPR001356Homeobox domain
CDDcd000863.38E-18255No hitNo description
SuperFamilySSF466895.56E-18264IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.609.5E-21362IPR009057Homeodomain-like
PfamPF000461.7E-16353IPR001356Homeobox domain
PRINTSPR000319.3E-72635IPR000047Helix-turn-helix motif
PROSITE patternPS0002703053IPR017970Homeobox, conserved site
PRINTSPR000319.3E-73551IPR000047Helix-turn-helix motif
PfamPF021839.1E-185597IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 210 aa     Download sequence    Send to blast
XRRLSPEQVH MLKMSFEEEN KLEPERKTEL AKKLGLQPRQ VAVWFQNRRA RCKTKTLERD  60
YNRLKSCYDS LTADYESIVK ENEKLKAEVV SLTEKMQSKE VSETSAVGQG SGSAVEEGGD  120
VAVPSDNVKV EDHFSTGSGG SAVVDDHEGP QLVDSGDSYF PDDDYPHEYV VPVDQSEEDD  180
GSDDGQNRFR YTFEAADHVE DNGLGWWVWS
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Han.16951e-131embryo
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Widely expressed. {ECO:0000269|PubMed:16055682}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription activator involved in leaf development. Binds to the DNA sequence 5'-CAAT[AT]ATTG-3'. {ECO:0000269|PubMed:8535134}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021977088.11e-153homeobox-leucine zipper protein HOX16-like isoform X1
RefseqXP_021977089.11e-153homeobox-leucine zipper protein HOX16-like isoform X2
SwissprotQ022832e-60HAT5_ARATH; Homeobox-leucine zipper protein HAT5
TrEMBLA0A251U7C91e-152A0A251U7C9_HELAN; Putative homeobox-leucine zipper protein HOX16
STRINGXP_010251293.14e-83(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01470.13e-61homeobox 1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Ribone PA,Capella M,Arce AL,Chan RL
    A uORF Represses the Transcription Factor AtHB1 in Aerial Tissues to Avoid a Deleterious Phenotype.
    Plant Physiol., 2017. 175(3): p. 1238-1253
    [PMID:28956754]