PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Han007239
Organism
Helianthus annuus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Heliantheae alliance; Heliantheae; Helianthus
Family B3
Protein Properties Length: 209aa    MW: 23088.9 Da    PI: 8.6539
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-169a-Helianthus_annuus-9215PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B351.22.3e-16119202293
                EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
         B3   2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 
                +k++++s v +  +l lp +f++++  + +e+ t++lede g ++evk+i  k++    +++GWk+ v  ++L   D+++F+l+++++f  +
  Han007239 119 IKTMSTSQVISGFWLGLPLHFCKSYL-P-KEDATIVLEDEYGAQFEVKYIAYKYG----ISAGWKRXVVRHNLSIEDILIFQLVESTKF--K 202
                799**********************5.3.35679***************555555....99*********************9987766..3 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019363.14E-18111205IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.107.3E-17113205IPR015300DNA-binding pseudobarrel domain
CDDcd100176.06E-22116203No hitNo description
SMARTSM010195.8E-14118209IPR003340B3 DNA binding domain
PROSITE profilePS5086310.616118209IPR003340B3 DNA binding domain
PfamPF023624.5E-14119202IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 209 aa     Download sequence    Send to blast
MASPVTGDFN STVAPSDHHL PITDSNLPNP AEHNLTSAQS VKTSDFPDAS APVKRKKRKP  60
KRYEGSETDA LSNPSSSSLS LWREKSPIKG FKTPDPSSPA MIRAVEFQNS LGTDFPSCIK  120
TMSTSQVISG FWLGLPLHFC KSYLPKEDAT IVLEDEYGAQ FEVKYIAYKY GISAGWKRXV  180
VRHNLSIEDI LIFQLVESTK FKVASLSNV
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15259VKRKKRKP
25361KRKKRKPKR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022012942.11e-145B3 domain-containing protein Os01g0234100-like
TrEMBLA0A251SBT11e-144A0A251SBT1_HELAN; Putative DNA-binding pseudobarrel domain-containing protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G42700.19e-32B3 family protein