PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Han007260

Organism

Helianthus annuus

Taxonomic ID

4232

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Heliantheae alliance; Heliantheae; Helianthus

Family

YABBY

Protein Properties

Length: 208aa MW: 23368.5 Da PI: 8.8882

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PUT-169a-Helianthus_annuus-46158	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	222.6	1.1e-68	8	176	2	170
YABBY 2 dvfssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesastsvssekl 101 dv+ +seq+Cy+ CnfCn +lavsvP +slf +vtvrCGhCt+l svn+ +a+ + s+ + ++ + +l+ ++ ++s + + + s+s+ s+++ Han007260 8 DVTATSEQLCYIPCNFCNIVLAVSVPCSSLFDMVTVRCGHCTNLWSVNMGMAAAFHQSLSNSNS-PSQDSTSHLHAQKAPTHSPNYRVDMGSSSKYSSRM 106 67889********************************************9977777776333.33333333333333333333333333333333333 PP YABBY 102 senedee.vprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170 + + + ++++rPPekrqrvPsayn+fikeeiqrika+nPdishreafs+aaknWahfP+ihfgl Han007260 107 PMRPSPVpFTADQKINRPPEKRQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFPHIHFGL 176 333333203334559***************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04690	5.8E-69	12	176	IPR006780	YABBY protein
SuperFamily	SSF47095	1.96E-8	116	169	IPR009071	High mobility group box domain
Gene3D	G3DSA:1.10.30.10	1.3E-4	122	170	IPR009071	High mobility group box domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0007275	Biological Process	multicellular organism development

Sequence ? help Back to Top
Protein Sequence Length: 208 aa Download sequence Send to blast
MSNISCIDVT ATSEQLCYIP CNFCNIVLAV SVPCSSLFDM VTVRCGHCTN LWSVNMGMAA 60 AFHQSLSNSN SPSQDSTSHL HAQKAPTHSP NYRVDMGSSS KYSSRMPMRP SPVPFTADQK 120 INRPPEKRQR VPSAYNQFIK EEIQRIKANN PDISHREAFS TAAKNWAHFP HIHFGLMLEA 180 NDHPAKLDEL TYVQGSEKRQ RSRAPFMK

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	197	202	KRQRSR

Functional Description ? help Back to Top
Source	Description
UniProt	Promotes adaxial cell identity. Regulates the initiation of embryonic shoot apical meristem (SAM) development. {ECO:0000269\|PubMed:19837869}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021996680.1	1e-156	axial regulator YABBY 5-like isoform X1
Swissprot	Q8GW46	1e-76	YAB5_ARATH; Axial regulator YABBY 5
TrEMBL	A0A251T1Y1	1e-154	A0A251T1Y1_HELAN; Putative plant-specific transcription factor YABBY family protein
STRING	VIT_11s0016g05590.t01	5e-88	(Vitis vinifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G26580.2	9e-72	YABBY family protein

Publications ? help Back to Top
Husbands AY,Benkovics AH,Nogueira FT,Lodha M,Timmermans MC The ASYMMETRIC LEAVES Complex Employs Multiple Modes of Regulation to Affect Adaxial-Abaxial Patterning and Leaf Complexity. Plant Cell, 2015. 27(12): p. 3321-35 [PMID:26589551]