PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Han007281
Organism
Helianthus annuus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Heliantheae alliance; Heliantheae; Helianthus
Family SBP
Protein Properties Length: 207aa    MW: 23196.9 Da    PI: 6.6659
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-169a-Helianthus_annuus-18559PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP75.11.2e-23152199148
                --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSS CS
        SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsr 48 
                +CqvegC+ dl++ak+yhrrh++C  hsk+p+v+v+g+e+rfCqqCsr
  Han007281 152 RCQVEGCNLDLASAKDYHRRHRICANHSKSPKVIVAGMERRFCQQCSR 199
                6**********************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.104.3E-25147199IPR004333Transcription factor, SBP-box
PROSITE profilePS5114119.708150207IPR004333Transcription factor, SBP-box
SuperFamilySSF1036121.83E-22151201IPR004333Transcription factor, SBP-box
PfamPF031101.6E-18153199IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 207 aa     Download sequence    Send to blast
MDWNLNTPTE WDWENLAMYT NKEMEVPKNL PFSSQEHGVV DNVDFSFSAS ASVDSSSKET  60
IKPFGVFDDL PKDFLEKEES SWVGDQNGSF SNMVEEASVL SGEAMIGLKL GRHMSTSSSN  120
NKTATTSVTL FPTSNPMIKR SRASYLSSQS PRCQVEGCNL DLASAKDYHR RHRICANHSK  180
SPKVIVAGME RRFCQQCSRK VTFNNSF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj0_A4e-16153199652squamosa promoter-binding protein-like 12
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022037593.11e-145squamosa promoter-binding-like protein 12
RefseqXP_022037594.11e-145squamosa promoter-binding-like protein 12
TrEMBLA0A251UNQ11e-148A0A251UNQ1_HELAN; Putative squamosa promoter-binding-like protein
STRINGVIT_11s0065g00170.t014e-50(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43270.32e-27squamosa promoter binding protein-like 2