PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Han007343
Organism
Helianthus annuus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Heliantheae alliance; Heliantheae; Helianthus
Family AP2
Protein Properties Length: 205aa    MW: 22713.5 Da    PI: 8.9889
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-169a-Helianthus_annuus-5170PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP255.91.1e-1795154155
        AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng...kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                s y+GV++++++gr++A+++d  ++n+   k+ k+++lg ++ +e Aa+a++ a++k++g
  Han007343  95 SIYRGVTRHRWTGRYEAHLWDkNTWNQnqnKKgKQVYLGAYDDEEAAARAYDLAALKYWG 154
                57*******************888844468557*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008472.0E-1395154IPR001471AP2/ERF domain
SuperFamilySSF541711.11E-1795163IPR016177DNA-binding domain
SMARTSM003804.0E-2596168IPR001471AP2/ERF domain
PROSITE profilePS5103220.13996162IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.1E-1696163IPR001471AP2/ERF domain
PRINTSPR003671.3E-597108IPR001471AP2/ERF domain
PRINTSPR003671.3E-5144164IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 205 aa     Download sequence    Send to blast
GRCYSPLSPG FHFPFHLMAT ASSSDPVMKS EGSVSGSAGE ASDAAAAAAV GKASGYQQQL  60
MVKYRGLKKS KKERGCTAKE RISKMPPCAA GKRSSIYRGV TRHRWTGRYE AHLWDKNTWN  120
QNQNKKGKQV YLGAYDDEEA AARAYDLAAL KYWGPGTLIN FPVTDYTRDL EEMQNLSRED  180
YLASSEEKVV VSQEEPLNVM EFPGI
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021988633.11e-117AP2-like ethylene-responsive transcription factor At2g41710
RefseqXP_021988634.11e-117AP2-like ethylene-responsive transcription factor At2g41710
SwissprotQ8GWK25e-75AP2L4_ARATH; AP2-like ethylene-responsive transcription factor At2g41710
TrEMBLA0A251TJI01e-116A0A251TJI0_HELAN; Putative integrase-type DNA-binding superfamily protein
STRINGevm.model.supercontig_224.41e-79(Carica papaya)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41710.16e-68AP2 family protein