PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Han007474

Organism

Helianthus annuus

Taxonomic ID

4232

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Heliantheae alliance; Heliantheae; Helianthus

Family

WRKY

Protein Properties

Length: 197aa MW: 21186.2 Da PI: 8.898

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PUT-169a-Helianthus_annuus-39002	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	93.4	1.7e-29	92	150	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 +Dg++WrKYGqK++kgs++pr+YYrC+++ +C+++k+vers +p+ +++ Y+g+H h+ Han007474 92 NDGWAWRKYGQKPIKGSPYPRNYYRCSTTkDCSARKQVERSPVNPSSFIVSYSGDHLHP 150 8***********************9988**************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	1.0E-29	78	152	IPR003657	WRKY domain
SuperFamily	SSF118290	1.83E-25	86	152	IPR003657	WRKY domain
PROSITE profile	PS50811	30.905	86	152	IPR003657	WRKY domain
SMART	SM00774	1.8E-33	91	151	IPR003657	WRKY domain
Pfam	PF03106	1.0E-24	92	150	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 197 aa Download sequence Send to blast
MADDGWDLHA VVRSCTASAS AADNTPAAME DVGAQSLAAT AAVTSISFED GRSAYGQTNF 60 ISFSMTPVDS ARKRKSKNNK RIVETREEEL SNDGWAWRKY GQKPIKGSPY PRNYYRCSTT 120 KDCSARKQVE RSPVNPSSFI VSYSGDHLHP RPTHLSSLAG TTKTTKAVVG VTDLPEQPPC 180 SSSSPASTSS FSPATPX

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wj2_A	1e-19	82	152	8	77	Probable WRKY transcription factor 4
2lex_A	1e-19	82	152	8	77	Probable WRKY transcription factor 4
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021989298.1	1e-140	probable WRKY transcription factor 27
Swissprot	Q9FLX8	7e-41	WRK27_ARATH; Probable WRKY transcription factor 27
TrEMBL	A0A251TMM2	1e-139	A0A251TMM2_HELAN; Putative WRKY domain-containing protein
STRING	XP_002513635.1	9e-47	(Ricinus communis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G52830.1	3e-35	WRKY DNA-binding protein 27

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Mukhtar MS,Liu X,Somssich IE Elucidating the role of WRKY27 in male sterility in Arabidopsis. Plant Signal Behav, 2017. 12(9): p. e1363945 [PMID:28816593]