PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Han007588
Organism
Helianthus annuus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Heliantheae alliance; Heliantheae; Helianthus
Family C2H2
Protein Properties Length: 190aa    MW: 21388.1 Da    PI: 7.0049
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-169a-Helianthus_annuus-10793PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.80.000174971123
               EEETTTTEEESSHHHHHHHHHHT CS
    zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
               y+C+ C + F++   L  H+++H
  Han007588 49 YSCSFCRRDFRSAQALGGHMNVH 71
               99*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.21E-64676No hitNo description
Gene3DG3DSA:3.30.160.605.5E-44775IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.5724976IPR007087Zinc finger, C2H2
PROSITE patternPS0002805171IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 190 aa     Download sequence    Send to blast
MEQYSQYLMW VKSKNSIFNN TISHSWEEEA FAEDARGPLG GFVWPPRSYS CSFCRRDFRS  60
AQALGGHMNV HRRERAKLKQ SPNGVQQKPK SFLESTNTSF FPTHHSPSRV SSIPLLGQES  120
TTLASNSDTK SCVCDEVLVL GPVETNLYLG FDGCEDEEVM NCKRQKTTVV SPLVMGFSEG  180
QVDLELRLAR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1njq_A7e-134471229superman protein
2l1o_A7e-134471229Transcriptional regulator SUPERMAN
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17179RRERAKLKQ
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021981870.11e-142zinc finger protein 10-like
TrEMBLA0A251TTM41e-141A0A251TTM4_HELAN; Putative C2H2 and C2HC zinc fingers superfamily protein
STRINGPOPTR_0016s10460.14e-34(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37740.11e-25zinc-finger protein 10