PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Han007790
Organism
Helianthus annuus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Heliantheae alliance; Heliantheae; Helianthus
Family LBD
Protein Properties Length: 178aa    MW: 18772 Da    PI: 4.5823
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-169a-Helianthus_annuus-61696PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26050.46.2e-1626982395
     DUF260 23 paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95
               p+++++++ +v k FG+  + ++++++p+++r+++++sl++eA  r+ +Pv+Ga+g++++++++l+q+ + ++
  Han007790 26 PEAKARATLFVSKSFGRGDLFNFISSVPTHKRNALFQSLLFEAVGRTINPVNGAIGLLSTGNWHLCQAGVRTV 98
               7888999***********************************************************9977665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508919.5991104IPR004883Lateral organ boundaries, LOB
PfamPF031955.3E-132696IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 178 aa     Download sequence    Send to blast
MVAESYESDA ATPVSYALVX DWIDSPEAKA RATLFVSKSF GRGDLFNFIS SVPTHKRNAL  60
FQSLLFEAVG RTINPVNGAI GLLSTGNWHL CQAGVRTVLA GGTPAVLMNT SKVPETDESS  120
GVSEATGELS AMVIGNQIPK NLLLTSSSGG DEQSFSAVPA MSFRCSDGEE PKLLNLLV
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in young shoots, roots, stems, leaves and flowers. {ECO:0000269|PubMed:12068116}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021983470.11e-111LOB domain-containing protein 39-like
SwissprotQ9SZE88e-33LBD39_ARATH; LOB domain-containing protein 39
TrEMBLA0A251TYY61e-110A0A251TYY6_HELAN; Putative LOB domain-containing protein
STRINGXP_010092590.14e-38(Morus notabilis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37540.13e-35LOB domain-containing protein 39