PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Han007904
Organism
Helianthus annuus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Heliantheae alliance; Heliantheae; Helianthus
Family GRAS
Protein Properties Length: 169aa    MW: 18649.2 Da    PI: 8.3418
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-169a-Helianthus_annuus-8901PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS122.26.3e-3831131275374
       GRAS 275 lpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaW 373
                +++ s+e++++++++lg++i+nvvaceg +r+erhetl +W+ rl++aGF++v+l+++a kqa++ll+ ++ +dgyrv ee+g+l+lgW++rpL+++SaW
  Han007904  31 VSPVSSEDRFMSEVYLGKQICNVVACEGVDRVERHETLTQWKTRLDSAGFEAVHLGSNAFKQASMLLALFAgGDGYRVVEEEGCLMLGWHTRPLITTSAW 130
                567789999******************************************************************************************* PP

       GRAS 374 r 374
                +
  Han007904 131 K 131
                8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098514.741110IPR005202Transcription factor GRAS
PfamPF035142.2E-3531131IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 169 aa     Download sequence    Send to blast
MAPLSPKKAR TTTCGAAVNG GVDVGVNGGG VSPVSSEDRF MSEVYLGKQI CNVVACEGVD  60
RVERHETLTQ WKTRLDSAGF EAVHLGSNAF KQASMLLALF AGGDGYRVVE EEGCLMLGWH  120
TRPLITTSAW KIGELGRNHS SIDSVGSESN TRVTHWWWWI TRYIKRFFR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A3e-1135130285378Protein SCARECROW
5b3h_A3e-1135130284377Protein SCARECROW
5b3h_D3e-1135130284377Protein SCARECROW
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Han.4361e-133bud
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator that acts as a repressor of the gibberellin (GA) signaling pathway. Probably acts by participating in large multiprotein complexes that repress transcription of GA-inducible genes. Upon GA application, it is degraded by the proteasome, allowing the GA signaling pathway.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022021440.13e-78DELLA protein GAI1-like
SwissprotQ8S4W71e-54GAI1_VITVI; DELLA protein GAI1
TrEMBLE3TPY07e-80E3TPY0_HELAN; DELLA protein 2 (Fragment)
STRINGXP_008221422.16e-56(Prunus mume)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14920.14e-53GRAS family protein