PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Han007946

Organism

Helianthus annuus

Taxonomic ID

4232

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Heliantheae alliance; Heliantheae; Helianthus

Family

bHLH

Protein Properties

Length: 166aa MW: 19168.6 Da PI: 10.8694

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PUT-169a-Helianthus_annuus-57785	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	38.7	1.8e-12	98	143	6	55
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +++Er RR ri +++ +L+el P +k + a++L +AveYIk+Lq Han007946 98 SIAERVRRTRISERIKRLQELFPDI----DKHSNTADMLDMAVEYIKNLQ 143 689*******************5....477***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	13.941	92	142	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	6.8E-15	94	159	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	3.33E-10	96	147	No hit	No description
Gene3D	G3DSA:4.10.280.10	5.7E-15	97	164	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.4E-10	98	148	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	2.3E-9	98	143	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 166 aa Download sequence Send to blast
MNNHISFSSG PSXFYIKDLS PKLAGNKNNV LKRSRDGVLK MPQNVETRNH TPSLVHHMSL 60 PNTSSEMAVV DNFLQFQQES TVPWRTRAKR GFATHPRSIA ERVRRTRISE RIKRLQELFP 120 DIDKHSNTAD MLDMAVEYIK NLQKELQTLN DARARCQCSS KQLRSM

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022025575.1	1e-101	transcription factor bHLH130-like isoform X3
Swissprot	Q66GR3	2e-43	BH130_ARATH; Transcription factor bHLH130
TrEMBL	A0A251RTH5	2e-99	A0A251RTH5_HELAN; Putative myc-type, basic helix-loop-helix (BHLH) domain-containing protein
STRING	PGSC0003DMT400065029	7e-62	(Solanum tuberosum)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G42280.1	9e-46	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]