PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Han008056
Organism
Helianthus annuus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Heliantheae alliance; Heliantheae; Helianthus
Family B3
Protein Properties Length: 157aa    MW: 17798.3 Da    PI: 9.1559
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Han#S32085611PU_refUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B338.81.7e-1237124292
                EEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTEEEE-.TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS
         B3   2 fkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgryvlt.kGWkeFvkangLkegDfvvFkldgrsefel 92 
                  vl +s+  k+ r+ +p +f e+       + + +++     g++W++ +i ++++  + l+ + W +Fv +n+L++gD +vF+l++ ++ + 
  Han008056  37 YVVLRKSHIEKTFRMHFPSSFSEKLpvA---KIPAKIV---YGGKVWDLLYIGNQGPTNCRLEnQAWGKFVAENKLEVGDACVFELMEGRSNST 124
                567889999*************999532...3555566...689*******99999998777659********************985544333 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019369.22E-1632120IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.108.7E-1432127IPR015300DNA-binding pseudobarrel domain
CDDcd100173.36E-1834134No hitNo description
PROSITE profilePS5086310.3236136IPR003340B3 DNA binding domain
SMARTSM010193.9E-636136IPR003340B3 DNA binding domain
PfamPF023622.1E-1136126IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 157 aa     Download sequence    Send to blast
MDPPPSTSNH RKQKPAAQND GERDSNVWPL SGKPYFYVVL RKSHIEKTFR MHFPSSFSEK  60
LPVAKIPAKI VYGGKVWDLL YIGNQGPTNC RLENQAWGKF VAENKLEVGD ACVFELMEGR  120
SNSTSIKLRL QILKDEFPTE LKDKAEGFKS NNPICID
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022001841.11e-115B3 domain-containing protein Os04g0386900
TrEMBLA0A251SUU11e-113A0A251SUU1_HELAN; Putative DNA-binding pseudobarrel domain-containing protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49480.11e-10related to vernalization1 1