PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Han008247

Organism

Helianthus annuus

Taxonomic ID

4232

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Heliantheae alliance; Heliantheae; Helianthus

Family

HB-other

Protein Properties

Length: 139aa MW: 15147.8 Da PI: 5.3061

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Han#S18764564	PU_ref	Unigene	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	29.5	1.3e-09	95	139	2	46
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkv 46 +k+ ++tk q Lee+F+ + +++ ++++eLA+ l+L rqV v Han008247 95 KKKLRLTKAQSGLLEEAFKLHTTLNPKQKQELARDLKLRPRQVEV 139 677899*************************************86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.1E-8	83	139	IPR009057	Homeodomain-like
SuperFamily	SSF46689	5.99E-8	88	139	IPR009057	Homeodomain-like
PROSITE profile	PS50071	9.135	91	139	IPR001356	Homeobox domain
Pfam	PF00046	3.6E-7	95	139	IPR001356	Homeobox domain
CDD	cd00086	4.61E-7	95	139	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 139 aa Download sequence Send to blast
FHTFANTELA LELGLNPTLS MAENTTNPTK KPNPSSDHPL EPNLTLALSG DSCGGSSFSN 60 ACVKREREVA SDESGERGVE NTSGEEDEDG GVNCKKKLRL TKAQSGLLEE AFKLHTTLNP 120 KQKQELARDL KLRPRQVEV

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022005306.1	8e-95	homeobox-leucine zipper protein HAT22-like isoform X2
Swissprot	P46604	2e-26	HAT22_ARATH; Homeobox-leucine zipper protein HAT22
TrEMBL	Q39932	1e-95	Q39932_HELAN; Homeodomain protein (Fragment)
STRING	XP_009796334.1	7e-28	(Nicotiana sylvestris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37790.1	7e-29	HD-ZIP family protein

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Liu T,Longhurst AD,Talavera-Rauh F,Hokin SA,Barton MK The Arabidopsis transcription factor ABIG1 relays ABA signaled growth inhibition and drought induced senescence. Elife, 2017. [PMID:27697148] Song L, et al. A transcription factor hierarchy defines an environmental stress response network. Science, 2017. [PMID:27811239]