PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Han008344

Organism

Helianthus annuus

Taxonomic ID

4232

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Heliantheae alliance; Heliantheae; Helianthus

Family

HD-ZIP

Protein Properties

Length: 128aa MW: 15420.9 Da PI: 6.5436

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Han#S32089951	PU_ref	Unigene	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	65.1	9.9e-21	34	87	3	56
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k++++++eq++ Le Fe+++++ e+++eLAkklgL+ rqV vWFqNrRa+ k Han008344 34 KKRRLSPEQVHMLEMTFEEENKLEPERKTELAKKLGLQPRQVAVWFQNRRARCK 87 56689***********************************************99 PP
2	HD-ZIP_I/II	124.5	4.8e-40	33	124	1	92
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 ekkrrls eqv++LE++Feee+kLeperK+ela++LglqprqvavWFqnrRAR ktk lE+dy++ +++yd+l+++ e ++ +e+L++e+ Han008344 33 EKKRRLSPEQVHMLEMTFEEENKLEPERKTELAKKLGLQPRQVAVWFQNRRARCKTKTLERDYNRPQSCYDSLTTDYEXHRQGKEKLKAEVV 124 69**************************************************************************************9986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	1.24E-19	25	89	IPR009057	Homeodomain-like
PROSITE profile	PS50071	17.491	29	89	IPR001356	Homeobox domain
SMART	SM00389	1.1E-19	32	93	IPR001356	Homeobox domain
CDD	cd00086	6.59E-15	34	89	No hit	No description
Pfam	PF00046	6.2E-18	34	87	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	1.0E-21	35	97	IPR009057	Homeodomain-like
PRINTS	PR00031	4.7E-7	60	69	IPR000047	Helix-turn-helix motif
PROSITE pattern	PS00027	0	64	87	IPR017970	Homeobox, conserved site
PRINTS	PR00031	4.7E-7	69	85	IPR000047	Helix-turn-helix motif
Pfam	PF02183	2.0E-9	89	127	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 128 aa Download sequence Send to blast
MAFNMEESSK KRPFLSSFDD ILEEEYYDEQ LTEKKRRLSP EQVHMLEMTF EEENKLEPER 60 KTELAKKLGL QPRQVAVWFQ NRRARCKTKT LERDYNRPQS CYDSLTTDYE XHRQGKEKLK 120 AEVVSLTX

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Han.1695	0.0	embryo

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Widely expressed. {ECO:0000269\|PubMed:16055682}.

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription activator involved in leaf development. Binds to the DNA sequence 5'-CAAT[AT]ATTG-3'. {ECO:0000269\|PubMed:8535134}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021977088.1	2e-78	homeobox-leucine zipper protein HOX16-like isoform X1
Refseq	XP_021977089.1	2e-78	homeobox-leucine zipper protein HOX16-like isoform X2
Swissprot	Q02283	4e-46	HAT5_ARATH; Homeobox-leucine zipper protein HAT5
TrEMBL	A0A251U7C9	4e-77	A0A251U7C9_HELAN; Putative homeobox-leucine zipper protein HOX16
STRING	VIT_14s0066g01440.t01	6e-56	(Vitis vinifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G01470.1	2e-48	homeobox 1

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Ribone PA,Capella M,Arce AL,Chan RL A uORF Represses the Transcription Factor AtHB1 in Aerial Tissues to Avoid a Deleterious Phenotype. Plant Physiol., 2017. 175(3): p. 1238-1253 [PMID:28956754]