PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Han008349
Organism
Helianthus annuus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Heliantheae alliance; Heliantheae; Helianthus
Family HD-ZIP
Protein Properties Length: 128aa    MW: 15341.9 Da    PI: 6.0349
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-169a-Helianthus_annuus-7186PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox65.48e-213487356
               --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
   Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
               k++++++eq++ Le  Fe+++++  e+++eLAkklgL+ rqV vWFqNrRa+ k
  Han008349 34 KKRRLSPEQVHMLEMSFEEENKLEPERKTELAKKLGLQPRQVAVWFQNRRARCK 87
               56689***********************************************99 PP
2HD-ZIP_I/II131.72.8e-4233124192
  HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 
                  ekkrrls eqv++LE+sFeee+kLeperK+ela++LglqprqvavWFqnrRAR ktk lE+dy++ k++yd+l+++ e++ ke+ +L++e+ 
    Han008349  33 EKKRRLSPEQVHMLEMSFEEENKLEPERKTELAKKLGLQPRQVAVWFQNRRARCKTKTLERDYNRPKSCYDSLTTDYESIVKENXKLKAEVV 124
                  69**************************************************************************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.28E-192589IPR009057Homeodomain-like
PROSITE profilePS5007117.5082989IPR001356Homeobox domain
SMARTSM003894.2E-203293IPR001356Homeobox domain
PfamPF000465.4E-183487IPR001356Homeobox domain
CDDcd000861.98E-153489No hitNo description
Gene3DG3DSA:1.10.10.606.5E-223597IPR009057Homeodomain-like
PRINTSPR000314.7E-76069IPR000047Helix-turn-helix motif
PROSITE patternPS0002706487IPR017970Homeobox, conserved site
PRINTSPR000314.7E-76985IPR000047Helix-turn-helix motif
PfamPF021834.7E-1389127IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 128 aa     Download sequence    Send to blast
MAFNMEESSK KRPFLSSFDD ILEEEYYDEQ LTEKKRRLSP EQVHMLEMSF EEENKLEPER  60
KTELAKKLGL QPRQVAVWFQ NRRARCKTKT LERDYNRPKS CYDSLTTDYE SIVKENXKLK  120
AEVVSLTX
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Han.16950.0embryo
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Widely expressed. {ECO:0000269|PubMed:16055682}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription activator involved in leaf development. Binds to the DNA sequence 5'-CAAT[AT]ATTG-3'. {ECO:0000269|PubMed:8535134}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021977088.11e-84homeobox-leucine zipper protein HOX16-like isoform X1
RefseqXP_021977089.11e-84homeobox-leucine zipper protein HOX16-like isoform X2
SwissprotQ022833e-51HAT5_ARATH; Homeobox-leucine zipper protein HAT5
TrEMBLA0A251U7C93e-83A0A251U7C9_HELAN; Putative homeobox-leucine zipper protein HOX16
STRINGevm.model.supercontig_215.31e-60(Carica papaya)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01470.11e-53homeobox 1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Ribone PA,Capella M,Arce AL,Chan RL
    A uORF Represses the Transcription Factor AtHB1 in Aerial Tissues to Avoid a Deleterious Phenotype.
    Plant Physiol., 2017. 175(3): p. 1238-1253
    [PMID:28956754]