PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Han008372
Organism
Helianthus annuus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Heliantheae alliance; Heliantheae; Helianthus
Family GATA
Protein Properties Length: 124aa    MW: 14320.6 Da    PI: 10.926
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Han#S23519389PU_refUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA54.51.5e-17234335
       GATA  3 nCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35
                C+tt TplWR gp g+k+LCnaCG++y kk++
  Han008372  2 DCHTTRTPLWRGGPAGPKSLCNACGIKYNKKRR 34
               7*****************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011411.266129IPR000679Zinc finger, GATA-type
SMARTSM004011.7E-7146IPR000679Zinc finger, GATA-type
PfamPF003202.5E-15234IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.104.8E-14235IPR013088Zinc finger, NHR/GATA-type
SuperFamilySSF577161.43E-10238No hitNo description
CDDcd002022.90E-9352No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 124 aa     Download sequence    Send to blast
TDCHTTRTPL WRGGPAGPKS LCNACGIKYN KKRRQQMDKT GTKTSKVLNR NGDLKMKMKM  60
KLMVINQKQS QSQSQTQTHH NHDLQRSKRK RSSYERGKPW WNKLREEEQA AILLMAISCG  120
GCLY
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Han.61410.0embryo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021969370.11e-87GATA transcription factor 15-like
TrEMBLA0A251UGA43e-86A0A251UGA4_HELAN; Putative zinc finger, NHR/GATA-type
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49300.14e-20GATA transcription factor 16