PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Han008682
Organism
Helianthus annuus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Heliantheae alliance; Heliantheae; Helianthus
Family CO-like
Protein Properties Length: 386aa    MW: 41960.4 Da    PI: 6.1304
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Han#S56996478PU_refUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box20.88e-071858437
   zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg.......H 37
               r+C+++ + + +++C+ +  +lC  C   +H         H
  Han008682 18 RVCDTCRSAPCTIYCRPDAAYLCTACDARIHAAnklqssqH 58
               79*****************************6555555566 PP
2zf-B_box29.12.1e-0961105341
   zf-B_box   3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvp 41 
                 ++C+ +e+ ++ + C+ +   lC +C   +H+       H +vp
  Han008682  61 VWVCEACEQAPAAFICKADAASLCTTCDADIHSAnplarrHHRVP 105
                689*****************************6688999977776 PP
3CCT67.63.3e-23316359144
        CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                Rea++lRY+eK+ktRkFeK+i Y+sRKa+Ae+RpR+KGrF+k++
  Han008682 316 REARVLRYREKKKTRKFEKTIXYASRKAYAETRPRIKGRFAKRT 359
                9*****************************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501199.841563IPR000315B-box-type zinc finger
SMARTSM003363.3E-61563IPR000315B-box-type zinc finger
CDDcd000213.01E-71863No hitNo description
PROSITE profilePS5011910.90759106IPR000315B-box-type zinc finger
PfamPF006434.2E-760105IPR000315B-box-type zinc finger
CDDcd000213.77E-862106No hitNo description
SMARTSM003368.9E-964106IPR000315B-box-type zinc finger
PROSITE profilePS5101716.073316358IPR010402CCT domain
PfamPF062031.9E-17316358IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 386 aa     Download sequence    Send to blast
MLDHTGTLCL KTSTTWARVC DTCRSAPCTI YCRPDAAYLC TACDARIHAA NKLQSSQHER  60
VWVCEACEQA PAAFICKADA ASLCTTCDAD IHSANPLARR HHRVPVMPIP GALYGPQGAG  120
PDPRAVMGXG VGVDSQSGFL SNDGGGDEED ESEAASWLXF DGPVVVNKNS QSQSGGGGKD  180
SGFLFSGEGG EEDEYLEFME FGSDVQAQCY ANKVNDQKMS YADADSVVPV QKNHEFQNHK  240
FQLGVXYEGA AAGATGGYGY PQLTHSVSMS SMEVGVVPDS TITEASLSHS RPSKGTIDLF  300
SNPPVQVATQ LTPMDREARV LRYREKKKTR KFEKTIXYAS RKAYAETRPR IKGRFAKRTN  360
XDVDVDQMFP TNHMLEGGYG IVPRFX
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Han.74830.0embryo
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed throughout development.
UniprotTISSUE SPECIFICITY: Highly expressed in leaves. Expressed at lower levels in stems, flowers and siliques. Not detected in roots.
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. Does not affect flowering time.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Expressed with a circadian rhythm showing a peak at dawn.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022005335.10.0zinc finger protein CONSTANS-LIKE 2-like
SwissprotQ965021e-115COL2_ARATH; Zinc finger protein CONSTANS-LIKE 2
TrEMBLE3TPZ10.0E3TPZ1_HELAN; CONSTANS-like 2
STRINGXP_002532886.11e-140(Ricinus communis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02380.17e-86CONSTANS-like 2
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Blackman BK, et al.
    Contributions of flowering time genes to sunflower domestication and improvement.
    Genetics, 2011. 187(1): p. 271-87
    [PMID:20944017]
  3. Simon S,Rühl M,de Montaigu A,Wötzel S,Coupland G
    Evolution of CONSTANS Regulation and Function after Gene Duplication Produced a Photoperiodic Flowering Switch in the Brassicaceae.
    Mol. Biol. Evol., 2015. 32(9): p. 2284-301
    [PMID:25972346]