PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Han008712
Organism
Helianthus annuus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Heliantheae alliance; Heliantheae; Helianthus
Family HSF
Protein Properties Length: 208aa    MW: 24160.3 Da    PI: 9.707
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-169a-Helianthus_annuus-53600PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind97.81e-302869102
                   HHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXXXXXX CS
  HSF_DNA-bind   9 iledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekikrkks 102
                   +++d+++++++sw++ g+ fvv+++ efa+++Lp+ Fkhsnf+SFvRQLn+YgF+kv +++         weF ++ F+kg+ke l++i+r+ks
     Han008712   2 LVDDPATDHVVSWNAAGTGFVVWQPAEFARDLLPTLFKHSNFSSFVRQLNTYGFRKVATSR---------WEFCNERFHKGHKEVLCQIRRRKS 86 
                   6899******************************************************999.........**********************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004155.8E-40284IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.101.3E-31284IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004471.6E-27284IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467856.94E-28284IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000567.2E-93345IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043403458IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000567.2E-94658IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 208 aa     Download sequence    Send to blast
MLVDDPATDH VVSWNAAGTG FVVWQPAEFA RDLLPTLFKH SNFSSFVRQL NTYGFRKVAT  60
SRWEFCNERF HKGHKEVLCQ IRRRKSWANK AQPVTQTLKE SDEDQRSSST NSLSSGYNIL  120
MDENHKLKNE NKVLCSELWS MRKKCKELLD LVSMYAASSS NKEEEDDQRP KLFGVRLEVH  180
GDKERKRKRH EEVSESARRI LLSVNANK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A1e-1628427120Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021988950.11e-154heat stress transcription factor B-3-like
SwissprotO222305e-60HSFB3_ARATH; Heat stress transcription factor B-3
TrEMBLA0A251TLG41e-153A0A251TLG4_HELAN; Putative heat shock transcription factor B3
STRINGPOPTR_0016s05680.11e-91(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41690.17e-59heat shock transcription factor B3