PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Han008813
Common NameCOL1
Organism
Helianthus annuus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Heliantheae alliance; Heliantheae; Helianthus
Family CO-like
Protein Properties Length: 389aa    MW: 43752.4 Da    PI: 6.0408
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Han#S56996477PU_refUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box19.61.8e-061962340
   zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40
               +r C++++  + ++fCe +  +lC  C l+ H        H++v
  Han008813 19 ARLCDTCHLLPGTIFCEADLAYLCTACDLHVHAAnklssrHKRV 62
               789******99*********************667788888876 PP
2zf-B_box29.41.7e-0961106241
   zf-B_box   2 eerkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvp 41 
                + r+C+ +e+ ++ + C+ +   lC +C   +H+       H +vp
  Han008813  61 RVRVCDACEQAPAAFICKADAASLCTTCDAVIHSAnplsrrHHRVP 106
                5689*****************************6688889977766 PP
3CCT66.95.7e-23317360144
        CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                Rea++lRY+eK+ktRkFeK+irY+sRKa+Ae+RpR+ GrF+k++
  Han008813 317 REARVLRYREKKKTRKFEKTIRYASRKAYAETRPRIQGRFAKRT 360
                9*****************************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.0681764IPR000315B-box-type zinc finger
SMARTSM003364.6E-91764IPR000315B-box-type zinc finger
CDDcd000211.96E-62064No hitNo description
PROSITE profilePS5011911.34860107IPR000315B-box-type zinc finger
PfamPF006433.2E-762106IPR000315B-box-type zinc finger
CDDcd000218.42E-863107No hitNo description
SMARTSM003362.3E-965107IPR000315B-box-type zinc finger
PfamPF062033.5E-17317359IPR010402CCT domain
PROSITE profilePS5101716.36317359IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 389 aa     Download sequence    Send to blast
MLNEDLTSTL CLKNSTTRAR LCDTCHLLPG TIFCEADLAY LCTACDLHVH AANKLSSRHK  60
RVRVCDACEQ APAAFICKAD AASLCTTCDA VIHSANPLSR RHHRVPVMPI LGSSVYNNNN  120
NNEPWSVIGL GFQPQDSADQ ATLDHHNHHQ DEDEAASWLI FHDSPPKNNG QGQSQTNEFV  180
SNGDEYLELV DYNSCQDTPF SDDLKFDDDN KYMHDGINNN IQQQQRYGGC DADSLVPGQK  240
YHQLQHQHNF QNQKFQLGMD YETSNGGYGY SASLGDSVSM SSMEVGIAVD STITEASIDL  300
FSNPSIQMPT QLTPIDREAR VLRYREKKKT RKFEKTIRYA SRKAYAETRP RIQGRFAKRT  360
NLDIDIEVDQ MFSTSLINKM DPALSLHFX
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021983136.10.0zinc finger protein CONSTANS-LIKE 2-like
TrEMBLE3TPZ20.0E3TPZ2_HELAN; CONSTANS-like 1
STRINGXP_004304173.11e-115(Fragaria vesca)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02380.16e-85CONSTANS-like 2
Publications ? help Back to Top
  1. Blackman BK, et al.
    Contributions of flowering time genes to sunflower domestication and improvement.
    Genetics, 2011. 187(1): p. 271-87
    [PMID:20944017]