PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Han008829

Organism

Helianthus annuus

Taxonomic ID

4232

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Heliantheae alliance; Heliantheae; Helianthus

Family

FAR1

Protein Properties

Length: 177aa MW: 19745.2 Da PI: 9.7308

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Han#S48326076	PU_ref	Unigene	View CDS
PUT-169a-Helianthus_annuus-32630	PU_unref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	63	8.5e-20	39	113	1	89
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 +fY Y++++GF++r+ + ++s+ +g++++r++vCskeg++++ rtgC a ++v++ ++gkw+++++++eHnH+l Han008829 39 EFYTLYGTQAGFKIRIGQLYRSRVDGSVISRRYVCSKEGFQTP--------------LRTGCPAFIRVQRGESGKWVLANVKTEHNHDL 113 6*************************************998..............489*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	2.2E-9	39	80	IPR004330	FAR1 DNA binding domain
Pfam	PF03101	1.7E-6	83	113	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 177 aa Download sequence Send to blast
MTVRAKPGPA VFKPNEEGGE SRIEPYVGLE FDSAEAAQEF YTLYGTQAGF KIRIGQLYRS 60 RVDGSVISRR YVCSKEGFQT PLRTGCPAFI RVQRGESGKW VLANVKTEHN HDLDISGEIR 120 PPIIQRXTPP TPRPTSNVSS RTGIRSLEDE CPSGAIDLKR IKRVELDPAR EVNRAKV

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in hypocotyls, rosette and cauline leaves, inflorescences stems, flowers and siliques. {ECO:0000269\|PubMed:15591448}.

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022001699.1	1e-112	protein FAR1-RELATED SEQUENCE 7-like
Swissprot	Q9M8J3	4e-46	FRS7_ARATH; Protein FAR1-RELATED SEQUENCE 7
TrEMBL	A0A251STX3	1e-110	A0A251STX3_HELAN; Putative FAR1-related sequence 7
STRING	Migut.N00138.1.p	5e-71	(Erythranthe guttata)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G06250.1	8e-44	FAR1-related sequence 7

Publications ? help Back to Top
Ritter A, et al. The transcriptional repressor complex FRS7-FRS12 regulates flowering time and growth in Arabidopsis. Nat Commun, 2017. 8: p. 15235 [PMID:28492275] Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]