PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Han008980
Organism
Helianthus annuus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Heliantheae alliance; Heliantheae; Helianthus
Family LFY
Protein Properties Length: 426aa    MW: 46865.2 Da    PI: 8.3731
Description LFY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Han#S56996467PU_refUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FLO_LFY621.41.6e-18924064386
    FLO_LFY   4 eafsaslfkwdpraaaaapparlleeaavseapleaaaaaaark.lr..................eleelfkayGvryltvakiaelGftvstLvdmkde 84 
                +++s+slfkwd+raa a+p+ar++e  +++++p+ +++     + +                   +lee+f+ayGvry+t+aki elGft++tL+dmkde
  Han008980   2 DSLSSSLFKWDTRAALAPPAARVYEPVTLQPQPQPQQQXPPPXSsMAatsagmggylvresrdlgGLEEVFHAYGVRYFTAAKILELGFTANTLLDMKDE 101
                67899***********9999999999988887733332222222122345667788888999999*********************************** PP

    FLO_LFY  85 elddlmkslseifrldllvGeryGikaavraerrrleeeeaekkrrkllsedeetaldalsqeglseepvqeekeaagsggeglgeaelvaaeekkseee 184
                eld++m+sl++ifr+dllvGeryGikaavraerrrleee+  ++rr ll +d++++ldalsqeglse pvq+e+ea+gsgg+g g +  +a+      + 
  Han008980 102 ELDEMMNSLCHIFRWDLLVGERYGIKAAVRAERRRLEEED--SRRRYLLGSDNTNTLDALSQEGLSEXPVQQEIEAVGSGGGGGGGWXFAAMGMCAGAKX 199
                **************************************88..89999********************************999999999888775322222 PP

    FLO_LFY 185 kkkaskkkqkrkkkkelkse......ededeeeeededeegsgedgeerqrehPfivtepgevargkknGLDYLfdLyeqCrefLlqvqkiakerGekcP 278
                k+   ++k+k+   k +  +       d++ e+e+d++ e++g +g erqrehPfivtepgevargkknGLDYLf+LyeqCr+fL+qvq+iakerGekcP
  Han008980 200 KH-GGQRKSKKLGVKGRIGSssqagrGDDNYENESDDEPENGGGGGAERQREHPFIVTEPGEVARGKKNGLDYLFHLYEQCRDFLIQVQTIAKERGEKCP 298
                22.21222222222221111234454666667777777788899999***************************************************** PP

    FLO_LFY 279 tkvtnqvfryakkagasyinkPkmrhYvhCYalhcLdeeasnalrrafkergenvGawrqacykplvaiaarqgwdidavfnahprLsiWYvPtkLrqLC 378
                tkvtnqvfr+akkagasyinkPkmrhYvhCYalhcLd   snalrr fkergenvGawrqacykplv+iaarqgwdida+fn+hprLsiWYvPtkLrqLC
  Han008980 299 TKVTNQVFRFAKKAGASYINKPKMRHYVHCYALHCLDXXGSNALRRDFKERGENVGAWRQACYKPLVTIAARQGWDIDAIFNTHPRLSIWYVPTKLRQLC 398
                **************************************************************************************************** PP

    FLO_LFY 379 hlerskas 386
                h+er++a+
  Han008980 399 HAERRAAA 406
                ****9875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF016981.0E-1892405IPR002910Floricaula/leafy protein
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 426 aa     Download sequence    Send to blast
XDSLSSSLFK WDTRAALAPP AARVYEPVTL QPQPQPQQQX PPPXSSMAAT SAGMGGYLVR  60
ESRDLGGLEE VFHAYGVRYF TAAKILELGF TANTLLDMKD EELDEMMNSL CHIFRWDLLV  120
GERYGIKAAV RAERRRLEEE DSRRRYLLGS DNTNTLDALS QEGLSEXPVQ QEIEAVGSGG  180
GGGGGWXFAA MGMCAGAKXK HGGQRKSKKL GVKGRIGSSS QAGRGDDNYE NESDDEPENG  240
GGGGAERQRE HPFIVTEPGE VARGKKNGLD YLFHLYEQCR DFLIQVQTIA KERGEKCPTK  300
VTNQVFRFAK KAGASYINKP KMRHYVHCYA LHCLDXXGSN ALRRDFKERG ENVGAWRQAC  360
YKPLVTIAAR QGWDIDAIFN THPRLSIWYV PTKLRQLCHA ERRAAATAAS TSVGGGAAGG  420
XSAFLX
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2vy1_A1e-1092444232181PROTEIN LEAFY
2vy2_A1e-1092444232181PROTEIN LEAFY
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: In developing inflorescences, leaf primordia and very young leaves.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021984216.10.0floricaula/leafy homolog
SwissprotO040640.0FLLH_POPTR; Floricaula/leafy homolog
TrEMBLE3TQ020.0E3TQ02_HELAN; LEAFY (Fragment)
STRINGXP_006485166.10.0(Citrus sinensis)
STRINGXP_006436969.10.0(Citrus clementina)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61850.11e-149floral meristem identity control protein LEAFY (LFY)
Publications ? help Back to Top
  1. Tuskan GA, et al.
    The genome of black cottonwood, Populus trichocarpa (Torr. & Gray).
    Science, 2006. 313(5793): p. 1596-604
    [PMID:16973872]
  2. Blackman BK, et al.
    Contributions of flowering time genes to sunflower domestication and improvement.
    Genetics, 2011. 187(1): p. 271-87
    [PMID:20944017]