PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

IGS.gm_10_00046

Common Name

CHLNCDRAFT_133755

Organism

Chlorella variabilis NC64A

Taxonomic ID

554065

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Chlorellales; Chlorellaceae; Chlorella

Family

SBP

Protein Properties

Length: 1055aa MW: 106055 Da PI: 4.966

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
IGS.gm_10_00046	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	69.3	7.5e-22	54	129	1	75
--SSTT-----TT--HHHHHTT--HHHHT-S-EE.ETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvl.vsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrk 75 +CqvegC +l +++y++r ++Ce h +a +++ +sg+ rfCqqC++ ls fD e+rsCr L++ n+rr+ IGS.gm_10_00046 54 CCQVEGCPRQLLPLRSYYQRQHICEEHFRALAITdASGHVSRFCQQCTKLEPLSSFDGERRSCRVSLDRRNQRRQG 129 6**************************988875899**********************************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51141	18.982	52	130	IPR004333	Transcription factor, SBP-box
Gene3D	G3DSA:4.10.1100.10	6.3E-19	52	117	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	8.37E-19	53	130	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	4.4E-25	55	128	IPR004333	Transcription factor, SBP-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0016021	Cellular Component	integral component of membrane
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1055 aa Download sequence Send to blast
MSYTEGADPE WRMEAVDWSP VDMTARPRAA KAEASTASAA AAKKRANMRC ANYCCQVEGC 60 PRQLLPLRSY YQRQHICEEH FRALAITDAS GHVSRFCQQC TKLEPLSSFD GERRSCRVSL 120 DRRNQRRQGK RGSGGANSSG GSGSGSGSVT RLHGDSPIAF AQRPSLSAEA PAALGGAAAN 180 GSANGWTLPH GPAAAANSAA AWTQQQQQQQ QAEALLPGPG AGGVQAFWVQ QVEAAWLASA 240 QAHAHAQAQS DHSASFYGPG PASSGLASAG PSMVLPAPQP PAPHSQLQAQ AQAQAGLAPL 300 PAPQPVGAAA SAATVAHLPE VAVSAGGGGG TVGGLSSLEM DQLLAMDADC LADAILRGSG 360 GPAALPSPLE STAGQAGLPS LLPSPHPQAA AQWPPAAPAG AAPYAAQPAW GGLEAGPSFA 420 QQQQLLQAQM QQQQALLVAQ RRQQQAQMQE LQQRQQRAWH QALMQGGLGL PPSASMTPPH 480 PAFAYEPAHA SLPPPPAPSP TPQLTPAERL AAAQLLGDLD GSGEGQVDLE ELLFPDLAAT 540 DLEETRLYGV RPEQLPAQLR GDLMTALALP NTVVQATMRS GCVHLTLTAL LSGEERWQLE 600 APGGAAAALA RLLPLARQLP CSRMVAQVGA SSAALLAQPA GAGPAVLLSL PLAPGSLPTG 660 VALATPLATT VSAAAGRFPL RCSHALLAGA GAGAPPLVLH CRRGGLHLAV SLAAPGAEVP 720 LPAAAGGWPP LGEEQAGDGG MEADGGEDGA ATGGTTEDPD TEEDEDEVLA LAEEEDAGMA 780 AAAAAEPAAL VEAEAWVPAA APQGGEGPPA SSFWQPGWGL YEFEMSQGAL VGEAAPVLVL 840 PDAAAGAAAE LATVARSPLA ASLLRLAGLV LAYLEDREAA GASADAVAAA AALQRKYPPL 900 AVARVAAAAR KLLDVAERAR WPVLTRLLLP AAAADGWRPA EHAAPAPAAA ETAATAAPLP 960 AATADPEAPL AGKLAPPEPF SFAKPGAAGE AAGGGKASGS GGKLGVAAGL PVPELSMRDG 1020 QQRVMHPAVL GAATLLVAGV VLGVGVALVT GHLA*

Sequence ? help Back to Top

Protein Sequence Length: 1055 aa Download sequence Send to blast

MSYTEGADPE WRMEAVDWSP VDMTARPRAA KAEASTASAA AAKKRANMRC ANYCCQVEGC  60
PRQLLPLRSY YQRQHICEEH FRALAITDAS GHVSRFCQQC TKLEPLSSFD GERRSCRVSL  120
DRRNQRRQGK RGSGGANSSG GSGSGSGSVT RLHGDSPIAF AQRPSLSAEA PAALGGAAAN  180
GSANGWTLPH GPAAAANSAA AWTQQQQQQQ QAEALLPGPG AGGVQAFWVQ QVEAAWLASA  240
QAHAHAQAQS DHSASFYGPG PASSGLASAG PSMVLPAPQP PAPHSQLQAQ AQAQAGLAPL  300
PAPQPVGAAA SAATVAHLPE VAVSAGGGGG TVGGLSSLEM DQLLAMDADC LADAILRGSG  360
GPAALPSPLE STAGQAGLPS LLPSPHPQAA AQWPPAAPAG AAPYAAQPAW GGLEAGPSFA  420
QQQQLLQAQM QQQQALLVAQ RRQQQAQMQE LQQRQQRAWH QALMQGGLGL PPSASMTPPH  480
PAFAYEPAHA SLPPPPAPSP TPQLTPAERL AAAQLLGDLD GSGEGQVDLE ELLFPDLAAT  540
DLEETRLYGV RPEQLPAQLR GDLMTALALP NTVVQATMRS GCVHLTLTAL LSGEERWQLE  600
APGGAAAALA RLLPLARQLP CSRMVAQVGA SSAALLAQPA GAGPAVLLSL PLAPGSLPTG  660
VALATPLATT VSAAAGRFPL RCSHALLAGA GAGAPPLVLH CRRGGLHLAV SLAAPGAEVP  720
LPAAAGGWPP LGEEQAGDGG MEADGGEDGA ATGGTTEDPD TEEDEDEVLA LAEEEDAGMA  780
AAAAAEPAAL VEAEAWVPAA APQGGEGPPA SSFWQPGWGL YEFEMSQGAL VGEAAPVLVL  840
PDAAAGAAAE LATVARSPLA ASLLRLAGLV LAYLEDREAA GASADAVAAA AALQRKYPPL  900
AVARVAAAAR KLLDVAERAR WPVLTRLLLP AAAADGWRPA EHAAPAPAAA ETAATAAPLP  960
AATADPEAPL AGKLAPPEPF SFAKPGAAGE AAGGGKASGS GGKLGVAAGL PVPELSMRDG  1020
QQRVMHPAVL GAATLLVAGV VLGVGVALVT GHLA*

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_005847715.1	0.0	hypothetical protein CHLNCDRAFT_133755
TrEMBL	E1ZF62	0.0	E1ZF62_CHLVA; Uncharacterized protein
STRING	XP_005847715.1	0.0	(Chlorella variabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Chlorophytae	OGCP20	12	101

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G50670.1	9e-14	SBP family protein

Link Out ? help Back to Top
Entrez Gene	17354879

Publications ? help Back to Top
Blanc G, et al. The Chlorella variabilis NC64A genome reveals adaptation to photosymbiosis, coevolution with viruses, and cryptic sex. Plant Cell, 2010. 22(9): p. 2943-55 [PMID:20852019]