PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID IGS.gm_10_00361
Common NameCHLNCDRAFT_134070
Organism
Chlorella variabilis NC64A
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Chlorellales; Chlorellaceae; Chlorella
Family G2-like
Protein Properties Length: 279aa    MW: 29115.6 Da    PI: 10.8969
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
IGS.gm_10_00361genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like47.53.8e-1551104455
          G2-like   4 lrWtpeLHerFveaveqLGGsekAtPktilelmkv..kgLtlehvkSHLQkYRl 55 
                      + W   L +rF++a++q GG  +A Pk+il+ m+     Lt  +vkSHLQk+R+
  IGS.gm_10_00361  51 ISWKGSLEARFLKALQQAGGVWEAKPKAILQKMGAysTQLTTIQVKSHLQKHRI 104
                      67*******************************963378**************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.2E-1451106IPR009057Homeodomain-like
TIGRFAMsTIGR015573.8E-1351105IPR006447Myb domain, plants
SuperFamilySSF466891.63E-751106IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 279 aa     Download sequence    Send to blast
MDKMALRGKR SRQAWGQVES EEEPLSDSQD VVELEADCSS DDDSRRGRCA ISWKGSLEAR  60
FLKALQQAGG VWEAKPKAIL QKMGAYSTQL TTIQVKSHLQ KHRIKVAAEM QRQAAASGGE  120
ALPPSLPAPS ATAPLQQARQ AAQLQQAAAR QAAAAAAAAA APKPRRRPQK QSAGSQAELG  180
PSAPSSAARK LQQQQAQAQR RRLAAPARPP SAAGPSTPQK LPFEGGAAMP LRHSAPAVLV  240
DTASSGHQLS PVSGGSSSSG GVEHSRSHYS HGGVHHDP*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_005847838.10.0hypothetical protein CHLNCDRAFT_134070
TrEMBLE1ZEX80.0E1ZEX8_CHLVA; Uncharacterized protein
STRINGXP_005847838.10.0(Chlorella variabilis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06800.21e-08G2-like family protein
Publications ? help Back to Top
  1. Blanc G, et al.
    The Chlorella variabilis NC64A genome reveals adaptation to photosymbiosis, coevolution with viruses, and cryptic sex.
    Plant Cell, 2010. 22(9): p. 2943-55
    [PMID:20852019]