PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID IGS.gm_13_00158
Common NameCHLNCDRAFT_135230
Organism
Chlorella variabilis NC64A
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Chlorellales; Chlorellaceae; Chlorella
Family SBP
Protein Properties Length: 256aa    MW: 26961.2 Da    PI: 9.9466
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
IGS.gm_13_00158genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP73.24.6e-2339114175
                      --SSTT-----TT--HHHHHTT--HHHHT-S-EE.ETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S CS
              SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvl.vsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrk 75 
                      +CqvegC +dl+ +++++r+ ++Ce h++a vv+ ++g++ rfCqqC+r   l +f+ ++rsC++ Lak  +r ++
  IGS.gm_13_00158  39 VCQVEGCGVDLTGLRNFFRKQRICELHARADVVTdTAGRQLRFCQQCTRLEPLINFNAGRRSCKTSLAKRQARAHR 114
                      6*******************************996789999****************************9999776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.104.6E-2235102IPR004333Transcription factor, SBP-box
PROSITE profilePS5114119.90537115IPR004333Transcription factor, SBP-box
SuperFamilySSF1036121.08E-2138114IPR004333Transcription factor, SBP-box
PfamPF031103.4E-2440113IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 256 aa     Download sequence    Send to blast
MDPNLAGQWL QQSFSWDPSA LEARPAKAVP ARKAAGAAVC QVEGCGVDLT GLRNFFRKQR  60
ICELHARADV VTDTAGRQLR FCQQCTRLEP LINFNAGRRS CKTSLAKRQA RAHRGKAHSS  120
PDSSPERGGA PASGLGSSSS EGEGSLNASS GKGSSRRSGG AVLTSKRSRG SPPFSGAASP  180
GLAAMTSNES SRLASPGRYP ARLQQGMPAQ GQPQPQRLLP LPLQQGPEEM LWSSSLCEND  240
IEELLALDPG SYSYA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A1e-1134106576squamosa promoter binding protein-like 4
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_005846755.10.0hypothetical protein CHLNCDRAFT_135230
TrEMBLE1ZHS40.0E1ZHS4_CHLVA; Uncharacterized protein
STRINGXP_005846755.10.0(Chlorella variabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP2012101
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G02065.11e-16squamosa promoter binding protein-like 8
Publications ? help Back to Top
  1. Blanc G, et al.
    The Chlorella variabilis NC64A genome reveals adaptation to photosymbiosis, coevolution with viruses, and cryptic sex.
    Plant Cell, 2010. 22(9): p. 2943-55
    [PMID:20852019]