PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID IGS.gm_18_00206
Common NameCHLNCDRAFT_137100
Organism
Chlorella variabilis NC64A
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Chlorellales; Chlorellaceae; Chlorella
Family GATA
Protein Properties Length: 497aa    MW: 51739.2 Da    PI: 8.8472
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
IGS.gm_18_00206genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA45.41.1e-14424455132
             GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrk 32 
                      C nCg  +Tp+WR gp g++tLCnaCG++y+k
  IGS.gm_18_00206 424 CLNCGCHQTPQWRCGPLGPRTLCNACGVRYKK 455
                      99*****************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF577163.85E-10417455No hitNo description
SMARTSM004015.6E-7418467IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.106.2E-12422455IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.39E-13423455No hitNo description
PfamPF003203.0E-12424455IPR000679Zinc finger, GATA-type
PROSITE profilePS5011411.174424454IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007623Biological Processcircadian rhythm
GO:0009416Biological Processresponse to light stimulus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 497 aa     Download sequence    Send to blast
MAQAQAQEGL LRQEGLLRAG SWQAHGEAML LKTASDIVLQ VAAMQAPKHQ HRLATEGGGE  60
GGKTNSVDSS STAASQQPSV LLLDSATAGV AGLLPPLRQI SLDVIAATEL NRAKGLAPGE  120
RQSIFQDVFE QLAGKDDLPP LQAGQLYTLP SMQFLESMLN DFDKTGTSSG AAMNSLHISG  180
PLDLPGDAFD LPEFSSHGGG GAALRPTPFD QQQQQQHAAA AAQQQQQQAY YALHGGGAAG  240
APAYGGFVPT GSAPASLVAP SMVSSSGSLT LQASMRAHSA YEASRMAHLG GAPSHPQHQQ  300
LLMMQQQAAA AAAHRPGAAA GGVRQPAVPQ PAQPRATPRR ASQAYADFEY EEAEVSLQTS  360
KSGRVRKVAS FTGVKRRLDV ESRDSRGSVG GADVSSGEVG SRGSKGARKP AGGVKNRKGR  420
RTVCLNCGCH QTPQWRCGPL GPRTLCNACG VRYKKDLPLN CWPIRDGMVL PPGAMLPPGF  480
VVPPGITIHT QPADFE*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00530DAPTransfer from AT5G25830Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_005845458.10.0hypothetical protein CHLNCDRAFT_137100
TrEMBLE1ZM020.0E1ZM02_CHLVA; Uncharacterized protein
STRINGXP_005845458.10.0(Chlorella variabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP2201430
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25830.11e-13GATA transcription factor 12
Publications ? help Back to Top
  1. Blanc G, et al.
    The Chlorella variabilis NC64A genome reveals adaptation to photosymbiosis, coevolution with viruses, and cryptic sex.
    Plant Cell, 2010. 22(9): p. 2943-55
    [PMID:20852019]