PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID IGS.gm_1_00289
Common NameCHLNCDRAFT_133153
Organism
Chlorella variabilis NC64A
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Chlorellales; Chlorellaceae; Chlorella
Family bZIP
Protein Properties Length: 209aa    MW: 22131.4 Da    PI: 6.2826
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
IGS.gm_1_00289genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_1391.8e-1294142351
                     XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
          bZIP_1   3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkelee 51 
                     + krerr++ NR  Arr RqRK a ++eL+  v+ L+a N++L  +l e
  IGS.gm_1_00289  94 SQKRERRRIANRDCARRIRQRKTALVAELTASVELLQADNSRLLGTLTE 142
                     67****************************************9877655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1702.9E-991144No hitNo description
SMARTSM003383.6E-892156IPR004827Basic-leucine zipper domain
PfamPF001709.3E-1094142IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.5394145IPR004827Basic-leucine zipper domain
SuperFamilySSF579598.44E-996146No hitNo description
CDDcd147022.33E-897145No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0071215Biological Processcellular response to abscisic acid stimulus
GO:0071333Biological Processcellular response to glucose stimulus
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042802Molecular Functionidentical protein binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 209 aa     Download sequence    Send to blast
MRSSREKLVV REASSSAYEG SEGDSPEARL EPQGWGGASQ TRGAWEHAWA ADRRASRDSE  60
PPAGGSCWGG SGGGSGALEE WEQEVELGMM SPESQKRERR RIANRDCARR IRQRKTALVA  120
ELTASVELLQ ADNSRLLGTL TEVTRCWRDT TIENCELRSQ IALLQAGGSA SGGSHSGGSG  180
GSGSLLASPT GDLGRHLLSP GWPSPMVL*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00040PBMTransfer from AT5G28770Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_005852098.11e-144hypothetical protein CHLNCDRAFT_133153
TrEMBLE1Z2H01e-142E1Z2H0_CHLVA; Uncharacterized protein
STRINGXP_005852098.11e-143(Chlorella variabilis)
Publications ? help Back to Top
  1. Blanc G, et al.
    The Chlorella variabilis NC64A genome reveals adaptation to photosymbiosis, coevolution with viruses, and cryptic sex.
    Plant Cell, 2010. 22(9): p. 2943-55
    [PMID:20852019]