PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information? help Back to Top

TF ID

IGS.gm_1_00779

Common Name

CHLNCDRAFT_133643

Organism

Taxonomic ID

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Chlorellales; Chlorellaceae; Chlorella

Family

Protein Properties

Length: 78aa MW: 8783.85 Da PI: 11.2925

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
IGS.gm_1_00779	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	44.9	3.1e-14	2	44	36	78
TTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 36 sgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +g++qrfCq+C++f ls f kr+C+ L++hnerrr kq+ IGS.gm_1_00779 2 EGQQQRFCQKCGHFQLLSAFVGLKRTCQMALDQHNERRRDKQK 44 799************************************9875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51141	14.195	1	42	IPR004333	Transcription factor, SBP-box
Gene3D	G3DSA:4.10.1100.10	4.8E-8	2	29	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	3.5E-13	2	41	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	1.23E-11	2	43	IPR004333	Transcription factor, SBP-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 78 aa Download sequence Send to blast
MEGQQQRFCQ KCGHFQLLSA FVGLKRTCQM ALDQHNERRR DKQKRKRGQA WLGPSGNGDG 60 GGGAWAGRQQ QQQQQQK*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	40	46	DKQKRKR

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_005852265.1	1e-47	hypothetical protein CHLNCDRAFT_133643
TrEMBL	E1Z3I3	3e-46	E1Z3I3_CHLVA; Uncharacterized protein
STRING	XP_005852265.1	4e-47	(Chlorella variabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Chlorophytae	OGCP20	12	101

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G76580.1	2e-08	SBP family protein

Link Out ? help Back to Top
Entrez Gene	17359228

Publications ? help Back to Top
Blanc G, et al. The Chlorella variabilis NC64A genome reveals adaptation to photosymbiosis, coevolution with viruses, and cryptic sex. Plant Cell, 2010. 22(9): p. 2943-55 [PMID:20852019]